larssnip / micropanLinks
R package for microbial pangenomics
☆24Updated 3 years ago
Alternatives and similar repositories for micropan
Users that are interested in micropan are comparing it to the libraries listed below
Sorting:
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 2 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- ☆28Updated 10 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- ☆22Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 9 months ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 3 months ago
- ☆13Updated 8 years ago
- Tools for analyzing trees☆13Updated 7 months ago
- TransAnnot - a fast transcriptome annotation pipeline☆19Updated 10 months ago
- An easy way of MLSTyping your genomes in R.☆18Updated 4 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 4 months ago
- MAG Circularization Method☆32Updated last month
- MAGinator - Accurate SNV calling and profiling of MAGs☆24Updated 6 months ago
- Bacterial taxonomy construction and evaluation in R☆14Updated last year
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆30Updated this week
- Calculate assocations between genes and traits☆29Updated 8 months ago
- Discover and annotate the virome☆54Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Automatic Assembly For The Fungi☆25Updated 2 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Updated 2 years ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆10Updated 3 years ago