Simple scripts for concatenate alignments and rename terminals for phylogenetics
☆22Sep 20, 2022Updated 3 years ago
Alternatives and similar repositories for Utensils
Users that are interested in Utensils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 3 years ago
- ☆11Mar 4, 2025Updated last year
- A tool for evaluating long-read de novo assembly results☆53Aug 25, 2024Updated last year
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- An imagemagick-like frontend to Biopython SeqIO☆117Mar 18, 2024Updated 2 years ago
- ☆21Dec 30, 2025Updated 4 months ago
- ☆10Dec 20, 2022Updated 3 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆15Jun 6, 2024Updated last year
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated last year
- A tool for evaluate long-read de novo assembly results☆49Aug 28, 2024Updated last year
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆13Jan 25, 2016Updated 10 years ago
- ☆12Feb 16, 2025Updated last year
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Mar 28, 2026Updated last month
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆23Oct 26, 2020Updated 5 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 7 months ago
- Examples of application of comparative methods in R☆60Oct 3, 2022Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆22Aug 11, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses☆24Mar 7, 2025Updated last year
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- Taxonomy-aware DNA sequence processing toolkit☆34Feb 23, 2026Updated 2 months ago
- Extract metadata from biosamples in NCBI☆17Mar 12, 2026Updated last month
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆18Apr 28, 2023Updated 3 years ago
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago