ballesterus / Utensils
Simple scripts for concatenate alignments and rename terminals for phylogenetics
☆21Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for Utensils
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆42Updated 8 months ago
- ☆21Updated 10 years ago
- ☆32Updated 3 years ago
- Analyze and simulate Pool-Seq time series data☆15Updated 2 years ago
- Automatic evaluation of HGTs☆25Updated 2 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆30Updated 8 months ago
- Cost-efficient genome-wide gene expression profiling☆16Updated last year
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆11Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated this week
- Automated de novo assembly of whole chloroplast genomes.☆44Updated last month
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆19Updated 3 years ago
- Dinoflagellate Annotation Workflow☆12Updated 2 years ago
- ☆39Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆28Updated 2 months ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆16Updated 2 years ago
- Genome-Genome circle synteny☆23Updated 11 months ago
- ☆9Updated 8 years ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- paml documentation and tutorials☆47Updated last year
- A box of genomics tools☆21Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆54Updated 6 years ago
- Diploid genome assembly analysis tools☆13Updated 2 months ago