ballesterus / UtensilsLinks
Simple scripts for concatenate alignments and rename terminals for phylogenetics
☆21Updated 2 years ago
Alternatives and similar repositories for Utensils
Users that are interested in Utensils are comparing it to the libraries listed below
Sorting:
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- ☆22Updated 11 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Ancient microbiome snakemake workflow☆25Updated 2 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 4 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆32Updated 4 years ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Automatic evaluation of HGTs☆29Updated 4 months ago
- ContScout sequence contamination filter tool☆20Updated last month
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 5 months ago
- Analyze and simulate Pool-Seq time series data☆15Updated 3 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 5 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆37Updated last month
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- ☆14Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆19Updated 2 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆49Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year