Simple scripts for concatenate alignments and rename terminals for phylogenetics
☆22Sep 20, 2022Updated 4 years ago
Alternatives and similar repositories for Utensils
Users that are interested in Utensils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- ☆22Sep 30, 2026Updated last month
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 7 years ago
- A tool for evaluate long-read de novo assembly results☆52Aug 28, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for evaluating long-read de novo assembly results☆55Aug 25, 2024Updated 2 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Introduction and advanced uses of k-mers in biodiversity genomics using modern k-mer tools and methods.☆12Dec 15, 2025Updated 10 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- Input files and scripts related to our study entitled "Epidemiological hypothesis testing using a phylogeographic and phylodynamic framew…☆13Oct 27, 2024Updated 2 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 7 years ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Sep 18, 2026Updated last month
- ☆11Mar 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 8 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆37Oct 25, 2024Updated 2 years ago
- ☆11Feb 16, 2025Updated last year
- Examples of application of comparative methods in R☆60Oct 3, 2022Updated 4 years ago
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated 2 years ago
- Dengue antigenic variation and evolutionary dynamics☆12Jan 7, 2022Updated 4 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An imagemagick-like frontend to Biopython SeqIO☆121Mar 18, 2024Updated 2 years ago
- a flexible tool for microsatellite investigation and visualization☆10Jun 15, 2026Updated 4 months ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 months ago
- Implementation of the TreeShrink problem☆61May 28, 2026Updated 5 months ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆13Jul 11, 2026Updated 3 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆56Dec 15, 2025Updated 10 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆17Jun 6, 2024Updated 2 years ago
- ☆11Dec 20, 2022Updated 3 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆38Apr 20, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- initial commit☆27Dec 29, 2022Updated 3 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- Alignment viewer for linux terminal☆132Sep 13, 2025Updated last year
- The MafFilter genome alignment processor☆19Oct 16, 2026Updated 2 weeks ago
- ☆13Oct 19, 2026Updated last week
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year