theMILOlab / SPATALinks
SPATA Package for spatial gene expression analysis
☆21Updated 3 years ago
Alternatives and similar repositories for SPATA
Users that are interested in SPATA are comparing it to the libraries listed below
Sorting:
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- ☆52Updated 2 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 2 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago
- ☆22Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated this week
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 9 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆66Updated 8 months ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆39Updated last month
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- ☆41Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated last month
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆29Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- ☆19Updated 5 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month