Alternatives and similar repositories for ST-GEARS

Users that are interested in ST-GEARS are comparing it to the libraries listed below

• bioinfo-biols / Flow2Spatial
  Flow2Spatial reconstructs spatial proteomics through transfer learning.
  ☆22Updated 7 months ago
• UCSC-VLAA / EpiFoundation
  Pytorch implementation of EpiFoundation
  ☆24Updated 9 months ago
• SuoLab-GZLab / CMAP
  Map large-scale single cells to the exact spatial locations
  ☆15Updated 6 months ago
• yuanzhiyuan / MENDER
  ☆12Updated last year
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆37Updated 3 years ago
• poseidonchan / TAPE
  Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
  ☆57Updated last year
• Genentech / pascient
  ☆17Updated 7 months ago
• ttgump / spaVAE
  Dependency-aware deep generative models for multitasking analysis of spatial genomics data
  ☆39Updated last year
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆74Updated last year
• dpeerlab / ENVI
  ☆50Updated 2 months ago
• Teichlab / celcomen
  ☆18Updated last week
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆20Updated 5 months ago
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 9 months ago
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆22Updated 3 years ago
• chenhcs / scResolve
  ☆13Updated last year
• SydneyBioX / HEtoSGEBench
  ☆16Updated 10 months ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆17Updated last year
• visze / sequence_cnn_models
  ☆13Updated 10 months ago
• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆27Updated 9 months ago
• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• theislab / scTab
  ☆61Updated last year
• yzf072 / spaTrack
  An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.
  ☆35Updated 8 months ago
• GlastonburyC / RNAPath
  Self-supervised representation learning combining GTEx histology, RNA-seq and WGS
  ☆31Updated 8 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆40Updated last year
• suinleelab / contrastiveVI
  ☆59Updated last year
• STOmics / StereoMMv1
  StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…
  ☆37Updated last week
• karthikj89 / humanpdac
  single cell analysis of treatment naive and treated human PDAC
  ☆25Updated 3 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆69Updated 2 years ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago