tare / SplotchLinks
Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data
☆21Updated 3 months ago
Alternatives and similar repositories for Splotch
Users that are interested in Splotch are comparing it to the libraries listed below
Sorting:
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆14Updated 4 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Updated 7 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- Statistical Inference for Unsupervised Learning☆16Updated 8 months ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Updated 4 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Updated last month
- Multi-omics studies are available here☆52Updated 3 years ago
- ☆29Updated 2 years ago
- Analaysis for the batch correction paper☆10Updated 4 months ago
- ☆12Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Comparison of single cell normalization strategies☆10Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆16Updated 8 months ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 3 years ago
- ☆28Updated 10 months ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- ☆37Updated last month
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 3 years ago
- ☆21Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated 2 years ago
- ☆16Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago