Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data
☆23May 19, 2025Updated last year
Alternatives and similar repositories for Splotch
Users that are interested in Splotch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Jun 1, 2026Updated 4 months ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆102Apr 30, 2026Updated 6 months ago
- Jax-based MaxEnt☆17Nov 24, 2019Updated 6 years ago
- Test genes for Spatial Variation☆193May 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 6 years ago
- A system for building mouse brain atlas from histology series☆11Aug 15, 2020Updated 6 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Single-cell Hierarchical Poisson Factorization☆76Feb 14, 2026Updated 8 months ago
- Single Cell RNA PolyA Site Discovery☆11Oct 23, 2026Updated last week
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- ☆13Sep 15, 2026Updated last month
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆17Oct 18, 2023Updated 3 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Turning the quasi-UMI method into a bioconductor package☆11Mar 3, 2021Updated 5 years ago
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- ☆12Mar 22, 2023Updated 3 years ago
- R client for the bioRxiv API (https://api.biorxiv.org/)☆16May 18, 2021Updated 5 years ago
- ☆14Jan 16, 2019Updated 7 years ago
- An R package for the analysis and interpretation of cell migration tracks.☆15Sep 19, 2025Updated last year
- Dimensionality reduction and batch integration methods for single cell data☆17Feb 9, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Dec 9, 2019Updated 6 years ago
- A public clone of the HypoMap Figure & analysis repository.☆12Sep 26, 2022Updated 4 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆492Jan 22, 2026Updated 9 months ago
- Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"☆15Jul 4, 2024Updated 2 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 5 years ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆54Nov 10, 2023Updated 2 years ago
- 在網路受限的 Docker Dev Container 裡安全執行 Claude Code，透過 iptables/ipset 防火牆白名單限制 AI Agent 的對外連線，降低資料外洩與誤操作風險。改自 Anthropic 官方 .devcontainer 參考實作。☆26Sep 12, 2026Updated last month
- clustering method for single-cell transcriptomics data☆11Oct 11, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 7 years ago
- ☆54Mar 7, 2023Updated 3 years ago
- Alternative Splicing ToolKit☆10Oct 29, 2025Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 3 years ago
- ☆48Oct 10, 2026Updated 3 weeks ago
- ☆13Aug 11, 2025Updated last year
- Bayesian modeling of multi-tissue ST data, with spot-level deconvolution for Visium-like technologies☆12Oct 5, 2026Updated 3 weeks ago