Alternatives and similar repositories for Splotch

Users that are interested in Splotch are comparing it to the libraries listed below

• ccshao / nimfa
  nimfa - A Python Library for Nonnegative Matrix Factorization Techniques
  ☆10Updated 7 years ago
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆14Updated 6 years ago
• pmelsted / AM_2024
  Analaysis for the batch correction paper
  ☆10Updated 7 months ago
• ncchung / jackstraw
  Statistical Inference for Unsupervised Learning
  ☆16Updated 11 months ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆15Updated 4 years ago
• vals / Blog
  ☆37Updated last month
• jhsiao999 / peco
  Predict cell cycle phase in a continuum from single-cell RNA-seq data
  ☆12Updated 5 years ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆23Updated 2 months ago
• simslab / cluster_diffex2018
  scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers
  ☆22Updated 4 years ago
• NikolayOskolkov / NormalizeSingleCell
  Comparison of single cell normalization strategies
  ☆10Updated 4 years ago
• tudaga / NMFreg_tutorial
  A tutorial on NMFreg applied to cerebellum data.
  ☆12Updated 5 years ago
• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 5 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• jingshuw / descend
  ☆18Updated 4 years ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆39Updated 4 years ago
• pachterlab / BHGP_2022
  ☆21Updated 3 years ago
• willtownes / spatial-factorization-py
  Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
  ☆16Updated 11 months ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆29Updated last month
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆59Updated 3 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆41Updated 3 years ago
• shazanfar / scHOT
  ☆11Updated 2 years ago
• czbiohub-sf / scRFE
  Single-cell identity definition using random forest modelling and recursive feature elimination
  ☆12Updated 5 years ago
• lmweber / diffcyt
  R package for differential discovery analyses in high-dimensional cytometry data
  ☆21Updated 9 months ago
• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 6 years ago
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 6 years ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago