tare / Splotch
Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data
☆17Updated last month
Alternatives and similar repositories for Splotch:
Users that are interested in Splotch are comparing it to the libraries listed below
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated last year
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Selecting the optimal trajectory inference based on a given dataset and user input 🔮☆18Updated 4 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Updated 6 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- ☆12Updated 5 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 2 years ago
- scRNA-seq data visualization from scrattch☆25Updated 10 months ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Updated 4 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 7 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago
- Statistical Inference for Unsupervised Learning☆16Updated last month
- R package for differential discovery analyses in high-dimensional cytometry data☆19Updated last week
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- Inference of switch-like differential expression along single-cell trajectories☆19Updated 7 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 3 months ago
- ☆16Updated 6 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated 3 weeks ago
- ☆12Updated last year
- ☆16Updated 3 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆14Updated last year
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆28Updated 5 years ago
- Supplement to the report in https://greenelab.github.io/czi-hca-report/☆9Updated 6 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- ☆11Updated 3 years ago