Alternatives and similar repositories for sams-vae

Users that are interested in sams-vae are comparing it to the libraries listed below

• jsxlei / scCLIP
  ☆33Updated last year
• Genentech / PerturbQA
  ☆39Updated 4 months ago
• microsoft / zero-shot-scfoundation
  ☆79Updated last month
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆157Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆85Updated 3 weeks ago
• theislab / prophet
  ☆38Updated last month
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆34Updated 2 years ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆101Updated last year
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆35Updated 6 months ago
• caokai1073 / uniPort
  a unified single-cell data integration framework by optimal transport
  ☆36Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆70Updated 6 months ago
• gersteinlab / DeepVelo
  ☆14Updated 3 years ago
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆28Updated 2 years ago
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆114Updated 2 years ago
• uhlerlab / cross-modal-autoencoders
  ☆56Updated 3 years ago
• welch-lab / VeloVAE
  Deep Generative Modeling of RNA Velocity
  ☆37Updated 3 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆52Updated 4 years ago
• AI4SCR / MatchCLOT
  Python package implementing our method MatchCLOT for multimodal single-cell data integration
  ☆14Updated 2 years ago
• kodaim1115 / scMM
  ☆18Updated 4 years ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆77Updated last year
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆150Updated 2 months ago
• siyuh / Squidiff
  ☆116Updated last week
• sunericd / TISSUE
  TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …
  ☆41Updated last year
• theislab / CFGen
  ☆25Updated 5 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆66Updated last year
• MUCDK / genot
  GENOT: Generative Neural Optimal Transport
  ☆14Updated last year
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 11 months ago
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 3 years ago
• aristoteleo / tabula
  federated learning with tabular learning
  ☆26Updated 11 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year