Alternatives and similar repositories for MRtree:

Users that are interested in MRtree are comparing it to the libraries listed below

• BrainStOrmics / Spaco
  Spatially constrained color profiling for visualizing single-cell resolution spatial data
  ☆24Updated 7 months ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆20Updated 3 months ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆18Updated 2 months ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated last week
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆29Updated 7 months ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆29Updated last year
• Teichlab / sctk
  ☆36Updated 6 months ago
• AllenInstitute / mfishtools
  Building Gene Sets and Mapping mFISH Data
  ☆16Updated last year
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆31Updated last month
• PoolLab / generecovery
  ☆29Updated 2 years ago
• wanglab-broad / CAST
  CAST package
  ☆34Updated 5 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• scverse / ecosystem-packages
  Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
  ☆21Updated last week
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆53Updated 3 weeks ago
• hms-dbmi / crestree
  Neural Crest Fate Decisions
  ☆10Updated 5 years ago
• MacoskoLab / slideseq-tools
  Tools for analyzing Slide-seq data
  ☆31Updated last year
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆36Updated 4 months ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆29Updated 2 months ago
• Wei-BioMath / NeuronChat
  ☆33Updated last year
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated last month
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 7 months ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 4 months ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• quon-titative-biology / scProjection
  Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection
  ☆13Updated last year
• xleizi / easySCF
  ☆40Updated 4 months ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆24Updated 2 years ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 3 years ago
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆24Updated this week
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆16Updated 5 months ago