ddb-qiwang / S2OmicsView external linksLinks
☆23Dec 17, 2025Updated last month
Alternatives and similar repositories for S2Omics
Users that are interested in S2Omics are comparing it to the libraries listed below
Sorting:
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Dec 1, 2025Updated 2 months ago
- ☆15Feb 20, 2025Updated 11 months ago
- ☆12Sep 29, 2023Updated 2 years ago
- This repository is for CellBin research group☆34Updated this week
- ☆25Feb 20, 2025Updated 11 months ago
- The single T cell annotation tool for scRNA-seq data☆24Apr 25, 2025Updated 9 months ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Oct 8, 2025Updated 4 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated 10 months ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆10Jan 20, 2022Updated 4 years ago
- Individual level Differential Expression Analysis for Single cells☆26Dec 24, 2022Updated 3 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Apr 22, 2025Updated 9 months ago
- Spot pseudo-Imager on top of histology☆44Dec 12, 2025Updated 2 months ago
- <<Managing Your Biological Data with Python>> wirtten in Python 3☆33Sep 21, 2017Updated 8 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Jan 21, 2026Updated 3 weeks ago
- ☆27Feb 4, 2026Updated last week
- PhiSpace for continuous phenotyping single-cell and spatial transcriptomics data☆10Feb 5, 2026Updated last week
- ☆12Apr 29, 2024Updated last year
- Official Code for Large-vocabulary forensic pathological analyses via prototypical cross-modal contrastive learning☆15Jul 24, 2025Updated 6 months ago
- ☆12Dec 23, 2025Updated last month
- Introduction to Reproducible Publications with Quarto☆11Jan 28, 2025Updated last year
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 5 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 2 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆12Dec 4, 2023Updated 2 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- ☆10Jul 9, 2024Updated last year
- 在R语言中使用ChatGPT（中国大陆版）☆12Mar 17, 2023Updated 2 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Aug 18, 2025Updated 5 months ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10May 31, 2024Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated 11 months ago
- ☆14Oct 24, 2025Updated 3 months ago
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Jan 10, 2024Updated 2 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 4 years ago
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆13Oct 12, 2023Updated 2 years ago