Alternatives and similar repositories for S2Omics

Users that are interested in S2Omics are comparing it to the libraries listed below

• ding-lab / ST_subclone_publication
  Code for spatial subclone paper
  ☆14Updated 10 months ago
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆14Updated 4 months ago
• compbioNJU / SpaTopic
  ☆15Updated 9 months ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 8 months ago
• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆26Updated 8 months ago
• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆28Updated 8 months ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated 11 months ago
• katherine-benjamin / topact-paper
  Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"
  ☆12Updated last year
• AndersonHu85 / ccRCC_multiomics
  ☆17Updated 2 years ago
• wanglabtongji / SpaceScanner
  Scanner of specific spatial patterns in tissues
  ☆14Updated 3 years ago
• xmuyulab / ims_gene_signature
  Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma
  ☆12Updated 2 years ago
• whwanglab / PDAC
  ☆13Updated 3 years ago
• Banovich-Lab / Spatial_PF
  ☆33Updated last month
• YiLab-SC / scHolography
  ☆11Updated last year
• karthikj89 / humanpdac
  single cell analysis of treatment naive and treated human PDAC
  ☆25Updated 3 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 10 months ago
• yunguan-wang / Spacia
  ☆30Updated 7 months ago
• sdentro / copykat_pipeline
  ☆13Updated last year
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆26Updated last year
• GuangyuWangLab2021 / Thor
  Cell level integrated analysis of tissue histology and spatial transcriptomics
  ☆27Updated 2 months ago
• walsh-quail-labs / IMC_Brain
  ☆20Updated 2 years ago
• CamaraLab / ConDecon
  R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…
  ☆13Updated last year
• soumelis-lab / ICELLNET
  ☆21Updated 5 months ago
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆43Updated 9 months ago
• yi-zhang / STHD
  STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition
  ☆35Updated 7 months ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆23Updated 6 months ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆44Updated 3 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated 10 months ago
• LiHongCSBLab / SOAPy
  ☆31Updated 9 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year