tkzeng / PangolinLinks
Pangolin is a deep-learning method for predicting splice site strengths.
☆82Updated last year
Alternatives and similar repositories for Pangolin
Users that are interested in Pangolin are comparing it to the libraries listed below
Sorting:
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- ☆59Updated 4 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆88Updated last month
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆148Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- A list of alternative splicing analysis resources☆46Updated 8 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 9 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 4 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- Collection of analysis tools for quantitative trait loci☆61Updated 3 weeks ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆70Updated this week
- FlashFry: The rapid CRISPR target site characterization tool☆77Updated last year
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆158Updated 3 weeks ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆133Updated last year
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆89Updated last month
- Hail helper functions for the gnomAD project and Translational Genomics Group☆97Updated 3 weeks ago
- HiC uniform processing pipeline☆61Updated 2 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆98Updated 3 weeks ago
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 4 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 4 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆112Updated last year