tkzeng / PangolinLinks
Pangolin is a deep-learning method for predicting splice site strengths.
☆76Updated last year
Alternatives and similar repositories for Pangolin
Users that are interested in Pangolin are comparing it to the libraries listed below
Sorting:
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- Quantification of transposable element expression using RNA-seq☆72Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 2 weeks ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Collection of analysis tools for quantitative trait loci☆57Updated last month
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- ☆58Updated 2 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 5 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Tools for working with BUS files☆101Updated 2 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆94Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆85Updated last month
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 weeks ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated 2 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆131Updated 11 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆139Updated 11 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆84Updated 2 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated 2 months ago
- Hail helper functions for the gnomAD project and Translational Genomics Group☆95Updated this week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 6 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆110Updated 4 months ago
- HiC uniform processing pipeline☆60Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 8 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 2 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆113Updated 2 weeks ago