Pangolin is a deep-learning method for predicting splice site strengths.
☆84Jun 17, 2024Updated last year
Alternatives and similar repositories for Pangolin
Users that are interested in Pangolin are comparing it to the libraries listed below
Sorting:
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Feb 26, 2025Updated last year
- ☆39Jul 3, 2025Updated 7 months ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- Website for checking the SpliceAI, Pangolin, and other predictor scores for variant(s) of interest.☆29Feb 10, 2026Updated 3 weeks ago
- A deep learning-based tool to identify splice variants☆486Feb 4, 2026Updated 3 weeks ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- ☆24Jul 29, 2025Updated 7 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆91Oct 30, 2025Updated 4 months ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 3 months ago
- ☆13Apr 18, 2022Updated 3 years ago
- Tissue-specific variant effect predictions on splicing☆42May 23, 2023Updated 2 years ago
- Curated list of resources for variant prioritization☆13Nov 18, 2025Updated 3 months ago
- ☆19Jul 28, 2025Updated 7 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆73Nov 14, 2025Updated 3 months ago
- ☆15Apr 10, 2024Updated last year
- A neural network model to predict splice site usage and splicing-altering mutations☆15Jul 24, 2025Updated 7 months ago
- ☆16Oct 17, 2024Updated last year
- Allele frequency filter app☆14May 4, 2022Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- A list of alternative splicing analysis resources☆48Mar 26, 2025Updated 11 months ago
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 6 months ago
- An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPe…☆31Feb 9, 2026Updated 3 weeks ago
- using all the bits for echt rapid variant annotation and filtering☆153Feb 18, 2026Updated last week
- Command-line tool for the visualization of splicing events across multiple samples☆138Jun 28, 2024Updated last year
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 8 years ago
- ☆12Apr 26, 2020Updated 5 years ago
- ☆39Apr 25, 2023Updated 2 years ago
- ☆49Sep 4, 2025Updated 5 months ago
- Tools for merging Tandem Repeat VCF files☆37Apr 30, 2025Updated 10 months ago
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆227Aug 28, 2025Updated 6 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated 11 months ago
- ☆18Mar 14, 2022Updated 3 years ago
- ☆17Jul 19, 2024Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 7 months ago
- Interpretable splicing model☆22Jun 14, 2023Updated 2 years ago