tkzeng / PangolinLinks
Pangolin is a deep-learning method for predicting splice site strengths.
☆85Updated last year
Alternatives and similar repositories for Pangolin
Users that are interested in Pangolin are comparing it to the libraries listed below
Sorting:
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Updated this week
- ☆60Updated 6 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆124Updated 4 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- Quantification of transposable element expression using RNA-seq☆82Updated 2 years ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆92Updated 3 months ago
- FlashFry: The rapid CRISPR target site characterization tool☆79Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆81Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆124Updated this week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆74Updated last week
- HiC uniform processing pipeline☆63Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆149Updated 2 weeks ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- Tools for working with BUS files☆102Updated 8 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- machine-readable file format for genomic library sequence and structure☆126Updated 5 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago
- Collection of analysis tools for quantitative trait loci☆61Updated this week
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 10 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago