Alternatives and similar repositories for multiWGCNA:

Users that are interested in multiWGCNA are comparing it to the libraries listed below

• JD2112 / methylr
  methylR: a single shiny solution from sequencer data to pathway analysis
  ☆12Updated 6 months ago
• datapplab / SBGNview
  ☆26Updated 2 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• Core-Bioinformatics / bulkAnalyseR
  ☆27Updated last year
• ucdavis-bioinformatics / scRNA_shiny
  scRNA-seq Shiny App
  ☆14Updated 2 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 6 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• dzhakparov / GeneSelectR
  ☆19Updated 11 months ago
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆17Updated 3 weeks ago
• Townsend-Lab-Yale / cancereffectsizeR
  cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer
  ☆18Updated 3 weeks ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 9 months ago
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆27Updated 6 months ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆29Updated 2 years ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 3 years ago
• Genentech / midasHLA
  R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…
  ☆12Updated last year
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆22Updated 5 years ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• julienrichardalbert / MEA
  ☆9Updated 5 years ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated last month
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• zanglab / SICER2
  ☆21Updated 2 months ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆25Updated 5 months ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 2 months ago
• hancockinformatics / pathlinkR
  Analysis and visualization of RNA-Seq results
  ☆29Updated 4 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆22Updated last year