dzhang32 / dasperLinks
Detecting Aberrant Splicing Events from RNA-sequencing data
☆16Updated 6 months ago
Alternatives and similar repositories for dasper
Users that are interested in dasper are comparing it to the libraries listed below
Sorting:
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 weeks ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 9 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- Explore the cancer relevance of your gene list☆51Updated 3 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Create QC and summary reports for Alevin output☆32Updated 2 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Merge fastq files split over lanes☆20Updated 7 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 10 months ago
- ☆38Updated 2 years ago
- binned motif enrichment analysis and visualisation☆40Updated last month
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆21Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago