vastgroup / vast-toolsLinks
A toolset for profiling alternative splicing events in RNA-Seq data.
☆81Updated 6 months ago
Alternatives and similar repositories for vast-tools
Users that are interested in vast-tools are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆99Updated 8 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- An R interface to the MEME Suite☆52Updated last month
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 2 weeks ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆72Updated last month
- ☆69Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago
- Tutorial Website☆59Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆86Updated 6 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- A list of alternative splicing analysis resources☆45Updated 4 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 weeks ago
- Demultiplexes a fastq.☆45Updated 4 years ago
- Tools for analyzing DNA methylation data☆43Updated this week
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- ☆58Updated 2 weeks ago
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated 3 weeks ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year