vastgroup / vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.
☆80Updated 2 months ago
Alternatives and similar repositories for vast-tools:
Users that are interested in vast-tools are comparing it to the libraries listed below
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 2 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆68Updated 3 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆69Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆68Updated last year
- An R interface to the MEME Suite☆50Updated 6 months ago
- Tutorial Website☆57Updated 4 years ago
- ☆30Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- ☆56Updated 3 years ago
- R package containing useful functions for mutational signature analysis☆81Updated this week
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- A list of alternative splicing analysis resources☆43Updated 3 weeks ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆33Updated 2 years ago
- A tool for bigWig files.☆119Updated 6 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 9 months ago
- Links to ATAC-seq analysis tools☆65Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 5 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆25Updated 2 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆47Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated 3 weeks ago
- release version☆51Updated 2 years ago