vastgroup / vast-toolsLinks
A toolset for profiling alternative splicing events in RNA-Seq data.
☆82Updated 7 months ago
Alternatives and similar repositories for vast-tools
Users that are interested in vast-tools are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 3 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- ☆72Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- An R interface to the MEME Suite☆52Updated 3 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated last month
- Tutorial Website☆59Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 2 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆73Updated 2 months ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆79Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A list of alternative splicing analysis resources☆46Updated 5 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆38Updated 2 years ago