ratschlab / spladderLinks
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
☆111Updated 5 months ago
Alternatives and similar repositories for spladder
Users that are interested in spladder are comparing it to the libraries listed below
Sorting:
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆120Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- ☆72Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- Publication quality NGS track plotting☆117Updated 2 months ago
- ☆82Updated 8 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆135Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 8 years ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated 3 weeks ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 8 months ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆157Updated 4 months ago
- ☆49Updated 2 years ago