ratschlab / spladder
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
☆106Updated 3 months ago
Alternatives and similar repositories for spladder:
Users that are interested in spladder are comparing it to the libraries listed below
- phasing and Allele Specific Expression from RNA-seq☆111Updated 6 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 2 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- ☆116Updated last year
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- Publication quality NGS track plotting☆109Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- ☆65Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆124Updated 5 months ago
- ☆108Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated 11 months ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- ☆71Updated 8 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated last week
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated 3 weeks ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆75Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- identifying mutational significance in cancer genomes☆60Updated 2 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆98Updated 9 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆122Updated 5 months ago
- An R package for inferring the subclonal architecture of tumors☆117Updated last year
- Quality of RNA-Seq Toolset☆52Updated 5 years ago
- Software program for checking sample matching for NGS data☆126Updated 7 months ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆127Updated 7 months ago