YeoLab / ExpeditionLinks
Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data
☆11Updated 8 years ago
Alternatives and similar repositories for Expedition
Users that are interested in Expedition are comparing it to the libraries listed below
Sorting:
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆12Updated 4 years ago
- ☆47Updated 10 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆47Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆34Updated 6 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- ☆51Updated last year
- scWGCNA☆61Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- ☆32Updated 3 years ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Code repository for single cell RNA-seq☆38Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆24Updated 2 weeks ago
- ☆62Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Repository for Cibersortx☆60Updated 4 years ago
- ☆87Updated 2 months ago