Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data
☆11Jun 29, 2017Updated 8 years ago
Alternatives and similar repositories for Expedition
Users that are interested in Expedition are comparing it to the libraries listed below
Sorting:
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 9 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Jun 17, 2024Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆90Jan 24, 2025Updated last year
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Jun 30, 2022Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆22Nov 24, 2023Updated 2 years ago
- Junction centric alternative splicing translator☆21Oct 31, 2022Updated 3 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 3 months ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 8 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆29Mar 2, 2020Updated 6 years ago
- ☆27Sep 2, 2021Updated 4 years ago
- Analysis pipeline for Ribosome footprinting data☆25Jan 29, 2026Updated last month
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Jul 31, 2023Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆55Jun 29, 2023Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Mar 13, 2022Updated 4 years ago
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Jul 28, 2025Updated 7 months ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆10Feb 16, 2026Updated last month
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Sample-specific CircRNA Viewer☆11Aug 15, 2018Updated 7 years ago
- tools to find circRNAs in RNA-seq data☆45Nov 16, 2017Updated 8 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago
- A list of alternative splicing analysis resources☆49Mar 26, 2025Updated 11 months ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated last year
- scID☆14Oct 21, 2021Updated 4 years ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 7 months ago
- A project to develop the R Shiny applications.☆12May 13, 2019Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Aug 27, 2024Updated last year
- ☆17Feb 16, 2024Updated 2 years ago
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated 8 months ago
- ENCODE DNase-seq pipeline essentials for running on dnanexus.☆12Sep 25, 2019Updated 6 years ago
- Implementation of hotspot2 by Eric Rynes☆18May 11, 2023Updated 2 years ago
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago
- ☆23Jun 7, 2024Updated last year
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- ☆26Jan 14, 2021Updated 5 years ago
- Python CLI to convert between zero and one based genomic coordinate systems☆23Jul 27, 2018Updated 7 years ago