YeoLab / Expedition
Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data
☆11Updated 7 years ago
Alternatives and similar repositories for Expedition:
Users that are interested in Expedition are comparing it to the libraries listed below
- ☆46Updated 7 months ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆11Updated 4 years ago
- ☆31Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆28Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- ☆30Updated 2 months ago
- ☆24Updated 5 months ago
- ☆21Updated 3 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated 9 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- ☆12Updated 8 months ago
- interactive visualization of single-cell transcriptomes☆11Updated last year
- ☆47Updated 2 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆17Updated last year
- R package of CSOmap(developing☆14Updated 3 years ago
- single-cell clustering based on alternative splicing landscapes☆19Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- ☆30Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆24Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 8 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year