YeoLab / ExpeditionLinks
Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data
☆11Updated 8 years ago
Alternatives and similar repositories for Expedition
Users that are interested in Expedition are comparing it to the libraries listed below
Sorting:
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆11Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- ☆47Updated 6 months ago
- ☆33Updated 6 years ago
- ☆82Updated last year
- scWGCNA☆61Updated 2 years ago
- ☆47Updated 5 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- ☆28Updated 9 months ago
- ☆49Updated 11 months ago
- ☆27Updated 4 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- Enrichment Networks for Pathway Enrichment Analysis☆55Updated 2 years ago
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆38Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆58Updated 4 years ago
- ☆30Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- ☆32Updated 4 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Repository for Cibersortx☆61Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated 11 months ago