Nucleomics-VIB / bionano-toolsLinks
Custom tools to 'facilitate' BioNano Genomics data analysis
☆33Updated 6 years ago
Alternatives and similar repositories for bionano-tools
Users that are interested in bionano-tools are comparing it to the libraries listed below
Sorting:
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- TGS scaffolding☆46Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆35Updated last year
- ☆48Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆31Updated 5 years ago
- ☆81Updated 5 months ago
- ☆77Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- finshingTool☆54Updated 8 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆31Updated 11 months ago
- Structural variant caller☆54Updated 3 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Detection and genotyping of structural variants☆18Updated 3 months ago
- ☆42Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Visualising discordant reads☆15Updated 9 years ago
- ☆32Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago