Alternatives and similar repositories for bionano-tools

Users that are interested in bionano-tools are comparing it to the libraries listed below

• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 4 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• kakitone / finishingTool
  finshingTool
  ☆55Updated 8 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 8 years ago
• mcfrith / tandem-genotypes
  ☆48Updated 11 months ago
• MeHelmy / princess
  ☆80Updated 3 months ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 2 years ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• Nextomics / nextsv
  ☆34Updated last year
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆18Updated last month
• farhangus / Sniffles2_plot
  ☆30Updated 9 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated 2 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• i5K-KINBRE-script-share / Irys-scaffolding
  scripts to parse IrysView output
  ☆39Updated 9 years ago
• tjiangHIT / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data
  ☆11Updated 5 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆47Updated 9 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 4 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆34Updated last week
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• sestaton / tephra
  A tool for discovering transposable elements and describing patterns of genome evolution
  ☆31Updated 2 years ago