i5K-KINBRE-script-share / Irys-scaffoldingLinks
scripts to parse IrysView output
☆39Updated 10 years ago
Alternatives and similar repositories for Irys-scaffolding
Users that are interested in Irys-scaffolding are comparing it to the libraries listed below
Sorting:
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- finshingTool☆54Updated 9 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated last week
- UCSC Nanopore☆44Updated 6 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- ☆83Updated 10 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- ☆45Updated 9 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- ☆78Updated 5 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- Tools for the analysis of structural variation in genomes☆81Updated last year
- ☆46Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- A program to call variants from genome alignment☆81Updated 8 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Data from the Human PanGenomics Project☆61Updated 4 years ago
- TGS scaffolding☆47Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Linked-Read Alignment Tool☆26Updated 6 years ago