i5K-KINBRE-script-share / Irys-scaffolding
scripts to parse IrysView output
☆39Updated 9 years ago
Alternatives and similar repositories for Irys-scaffolding:
Users that are interested in Irys-scaffolding are comparing it to the libraries listed below
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- finshingTool☆54Updated 8 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- TGS scaffolding☆46Updated 3 years ago
- ☆79Updated 8 months ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆37Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- ☆43Updated 8 years ago
- Structural Variant Index☆70Updated last month
- ☆47Updated 4 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆44Updated 2 years ago
- ☆76Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago