Alternatives and similar repositories for lava

Users that are interested in lava are comparing it to the libraries listed below

• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆24Updated 4 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 6 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆18Updated 5 years ago
• delocalizer / streammd
  Single-pass probabilistic duplicate marking of alignments with a Bloom filter.
  ☆23Updated 2 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• lh3 / nasw
  Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
  ☆19Updated last year
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 8 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated last month
• cdarby / samovar
  Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
  ☆23Updated 6 years ago
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated last year
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆14Updated 6 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated last year
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆23Updated last month
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆30Updated 7 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated last week
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 6 years ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆34Updated last year
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆28Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• CuiMiao-HIT / miniSNV
  ☆19Updated last month
• hallamlab / LAST-Plus
  Parallel implementation of the LAST aligner
  ☆18Updated 9 years ago
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Updated last year
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆32Updated 2 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆39Updated 2 years ago
• BoevaLab / SV-Bay
  Detection of structural variants in cancer mate-pair and paired-end data
  ☆13Updated 6 years ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year