LAVA: Lightweight Assignment of Variant Alleles
☆17Dec 27, 2017Updated 8 years ago
Alternatives and similar repositories for lava
Users that are interested in lava are comparing it to the libraries listed below
Sorting:
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- ☆15Jan 19, 2018Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Feb 2, 2026Updated last month
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Oct 22, 2018Updated 7 years ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 8 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- ☆20Dec 13, 2023Updated 2 years ago
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Oct 1, 2024Updated last year
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 8 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- ☆10Jun 9, 2020Updated 5 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- ☆24Aug 25, 2025Updated 6 months ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 9 months ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 2 years ago
- An Fast variant calling tool to detection germline and somatic variants☆11Feb 21, 2026Updated last week
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Noise-Cancelling Repeat Finder☆27Apr 11, 2023Updated 2 years ago
- Fast sequencing data quality metrics☆31Sep 10, 2025Updated 5 months ago
- ☆14Aug 30, 2025Updated 6 months ago