arshajii / lavaLinks
LAVA: Lightweight Assignment of Variant Alleles
☆17Updated 7 years ago
Alternatives and similar repositories for lava
Users that are interested in lava are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- k-mer similarity analysis pipeline☆23Updated 3 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆26Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated last year
- ☆15Updated 6 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Work for the tree sequence inference paper.☆23Updated 5 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last week
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Rapid and accurate ancestry inference using SNVs.☆26Updated 2 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- Annotating principal splice isoforms☆16Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated 11 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- ☆14Updated 2 years ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago