arshajii / lavaLinks
LAVA: Lightweight Assignment of Variant Alleles
☆17Updated 8 years ago
Alternatives and similar repositories for lava
Users that are interested in lava are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Ultra Fast NGS Data QC Tool☆28Updated 4 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated last year
- Annotating principal splice isoforms☆17Updated 2 months ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- k-mer similarity analysis pipeline☆22Updated 2 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 weeks ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 7 months ago
- ☆24Updated 2 years ago
- ☆22Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- ☆26Updated 5 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Updated 6 years ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆32Updated last month
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- ☆23Updated 2 weeks ago
- ☆14Updated 2 years ago