Alternatives and similar repositories for mapoptics:

Users that are interested in mapoptics are comparing it to the libraries listed below

• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• Nextomics / nextsv
  ☆34Updated 11 months ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆49Updated 7 months ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• tao-bioinfo / readfq
  A simple tool to calculate reads number and total base count in FASTQ file
  ☆20Updated 6 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆48Updated 5 years ago
• BGI-Qingdao / SLR-superscaffolder
  A scaffold assembling pipeline for stLFR reads.
  ☆15Updated 4 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 7 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 3 years ago
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆33Updated 6 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 9 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated 10 months ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆37Updated 2 years ago
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• caulilin / QTG_Seq
  ☆21Updated 6 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆9Updated last year
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆23Updated 3 years ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆26Updated last month
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆29Updated 5 months ago