FadyMohareb / mapopticsLinks
MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapping data and can be used for in depth exploration of hybrid scaffolding alignments.
☆17Updated 3 years ago
Alternatives and similar repositories for mapoptics
Users that are interested in mapoptics are comparing it to the libraries listed below
Sorting:
- ☆34Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 6 months ago
- ☆28Updated 2 years ago
- Structural variant merging tool☆52Updated 10 months ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- ☆51Updated 5 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Variant annotation and merging pipeline☆37Updated last month
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- ☆80Updated 4 months ago
- ☆31Updated 11 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆22Updated 6 years ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- circos pipeline☆20Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago