FadyMohareb / mapopticsLinks
MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapping data and can be used for in depth exploration of hybrid scaffolding alignments.
☆17Updated 3 years ago
Alternatives and similar repositories for mapoptics
Users that are interested in mapoptics are comparing it to the libraries listed below
Sorting:
- A pipeline for isoseq☆23Updated 7 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- ☆28Updated 2 years ago
- ☆34Updated last year
- SV genotyping with long reads☆39Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆30Updated 9 months ago
- ☆12Updated 6 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 7 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 11 months ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Calculate circos format data of GC content and GC skew from genome data.☆11Updated 10 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Simple script to generate whole-genome coverage plots☆18Updated 9 years ago
- Computes various SV statistics☆14Updated last year
- Structural variant merging tool☆50Updated 9 months ago
- This is the Haplotypo repository☆20Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Population-wide Deletion Calling☆35Updated last month
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago