MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapping data and can be used for in depth exploration of hybrid scaffolding alignments.
☆18Feb 18, 2022Updated 4 years ago
Alternatives and similar repositories for mapoptics
Users that are interested in mapoptics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- An easy way to run BioNano genomic analysis☆27Apr 9, 2021Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Oct 22, 2018Updated 7 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Jan 28, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scripts to parse IrysView output☆39Sep 3, 2015Updated 10 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆13Jun 10, 2022Updated 3 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- ☆12Feb 16, 2026Updated last month
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- ☆27Aug 29, 2025Updated 7 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated 2 years ago
- ☆29Oct 17, 2023Updated 2 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Sep 26, 2024Updated last year
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Aug 1, 2021Updated 4 years ago
- ☆30Mar 3, 2026Updated last month
- ☆16Jul 25, 2021Updated 4 years ago
- CoRAL: Reconstruction of focal amplifications with long reads☆24Apr 7, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12Feb 14, 2020Updated 6 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Jun 3, 2025Updated 10 months ago
- Laboratory Information Management System☆37Oct 30, 2020Updated 5 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- Post Assembly Variants Finder☆18Mar 24, 2026Updated 3 weeks ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆19Aug 1, 2023Updated 2 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆147Mar 19, 2026Updated 3 weeks ago
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations☆17Feb 5, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- GenePattern Python Library☆11Jan 26, 2024Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆48Feb 23, 2021Updated 5 years ago
- Detect viral infection and integration sites on NGS input. Manuscript is in preparation.☆10Jan 20, 2026Updated 2 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆22Jan 23, 2026Updated 2 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆19Jun 21, 2022Updated 3 years ago