applevir / STEAKLinks
Specific Transposable Element Aligner (HERV-K)
☆16Updated 6 years ago
Alternatives and similar repositories for STEAK
Users that are interested in STEAK are comparing it to the libraries listed below
Sorting:
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- ☆51Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 3 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago