Specific Transposable Element Aligner (HERV-K)
☆16Sep 12, 2019Updated 6 years ago
Alternatives and similar repositories for STEAK
Users that are interested in STEAK are comparing it to the libraries listed below
Sorting:
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆20Feb 2, 2021Updated 5 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Visualise interstrain recombination from environmental samples.☆26Apr 18, 2019Updated 6 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Oct 22, 2018Updated 7 years ago
- Compute N50/NG50 and auN/auNG☆33Oct 7, 2023Updated 2 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 6 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 6 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago
- alignment and assembly free☆14May 29, 2023Updated 2 years ago
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial☆11Jul 25, 2025Updated 7 months ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Links to data science, bioinformatics, statistics, and machine learning resources☆18Aug 20, 2020Updated 5 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Oct 7, 2015Updated 10 years ago
- Materials for Spring 2019 Applied Genomics Course☆21Apr 22, 2019Updated 6 years ago
- Software for ancestry estimation in unrelated individuals☆24Jan 31, 2026Updated last month
- VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF f…☆19Oct 27, 2021Updated 4 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Blabr - Scientific Computing for the Web☆20Dec 15, 2016Updated 9 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated last year
- Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-☆34Sep 20, 2019Updated 6 years ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- ☆18May 19, 2022Updated 3 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago