Specific Transposable Element Aligner (HERV-K)
☆16Sep 12, 2019Updated 7 years ago
Alternatives and similar repositories for STEAK
Users that are interested in STEAK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Oct 7, 2026Updated 3 weeks ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- tandem repeat finding from erroneous long reads☆15Jun 30, 2026Updated 4 months ago
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- transposable element typing pipeline☆20Sep 28, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 6 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated 2 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Links to data science, bioinformatics, statistics, and machine learning resources☆18Aug 20, 2020Updated 6 years ago
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 9 years ago
- ☆11Jul 15, 2024Updated 2 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 6 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 8 years ago
- Tao Yan's Plot Toolkit☆13Aug 20, 2019Updated 7 years ago
- Haplotype clustering in phased genotype data☆14Updated this week
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- A fast, robust and accurate variant calling software for human germline DNA analysis☆15Jun 30, 2026Updated 4 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- A collection of functions compatible with the Opentrons API☆10Oct 28, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- Script to collect sequence files from multiple NCBI WGS projects and process them (LEGACY SOFTWARE)☆10Apr 11, 2020Updated 6 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- example of shiny plots which react to clicking on points☆11Jun 18, 2015Updated 11 years ago
- alignment and assembly free☆14May 29, 2023Updated 3 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Domain based annotation of transposable elements☆25Jul 21, 2026Updated 3 months ago
- Shiny app for proteomics data analysis☆14Jul 6, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Visualise interstrain recombination from environmental samples.☆28Apr 18, 2019Updated 7 years ago
- Subgraph for Curve.fi☆10Mar 20, 2021Updated 5 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 10 years ago
- Software for ancestry estimation in unrelated individuals☆26Jan 31, 2026Updated 8 months ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Materials for Spring 2019 Applied Genomics Course☆21Apr 22, 2019Updated 7 years ago
- Simple script to generate whole-genome coverage plots☆19Jun 23, 2015Updated 11 years ago