Alternatives and similar repositories for coalhmm:

Users that are interested in coalhmm are comparing it to the libraries listed below

• pdimens / harpy
  Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
  ☆15Updated this week
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆34Updated 3 months ago
• rhysf / Diamond2GO
  ☆19Updated 4 months ago
• hannesbecher / shiny-k-mers
  Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…
  ☆13Updated 5 months ago
• VGP / vgp-tools
  ☆28Updated last year
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆64Updated last month
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• gwct / referee
  Reference genome quality scores
  ☆19Updated 4 years ago
• PalamaraLab / ASMC
  Ascertained Sequentially Markovian Coalescent
  ☆15Updated last month
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated last year
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆24Updated last month
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 2 years ago
• yechengxi / SparseAssembler
  A sparse k-mer graph based, memory-efficient genome assembler.
  ☆10Updated 6 years ago
• tanghaibao / quota-alignment
  Guided synteny alignment between duplicated genomes (within specified quota constraint)
  ☆56Updated 7 years ago
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated last year
• delehef / asgart
  A genome-scale, fast, and precise segmental duplications mapping tool
  ☆31Updated 4 months ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆11Updated 3 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 2 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 9 months ago
• RobersonLab / motif_scraper
  Tool for finding matches to degenerate sequence motifs in FASTA files.
  ☆12Updated 10 months ago
• eead-csic-compbio / allopolyploids
  PhyloSD: Phylogenomic Subgenome Detection pipeline
  ☆11Updated 2 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆44Updated 6 months ago
• tskit-dev / tsdate
  Infer the age of ancestral nodes in a tree sequence.
  ☆19Updated this week
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆43Updated 6 months ago
• petrelharp / popbio
  a short graduate population biology course
  ☆12Updated last year
• guyleonard / genomics_adventure
  Workshop on Genomics - Genomics Adventure
  ☆38Updated this week
• popgenmethods / ldpop
  Two locus likelihoods and ARGs under changing population size
  ☆13Updated 3 years ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 8 years ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated 9 months ago