birc-aeh / coalhmmLinks
CoalHMM
☆22Updated 12 years ago
Alternatives and similar repositories for coalhmm
Users that are interested in coalhmm are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆14Updated last year
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- Reference bias measuring toolkit☆19Updated 7 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- ☆38Updated 2 months ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- This is the Haplotypo repository☆22Updated last year
- Differential k-mer analysis☆38Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- SV calling for diploid assemblies☆29Updated last year
- ☆21Updated last year
- A box of genomics tools☆21Updated 5 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆29Updated 2 weeks ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 3 weeks ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Software for detecting introgression using supervised machine learning☆21Updated 3 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆20Updated 2 years ago
- ☆29Updated 2 years ago