Alternatives and similar repositories for coalhmm

Users that are interested in coalhmm are comparing it to the libraries listed below

• pdimens / harpy
  Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
  ☆17Updated this week
• hannesbecher / shiny-k-mers
  Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…
  ☆13Updated 10 months ago
• lauterbur / Flex-sweep
  Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.
  ☆14Updated last year
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆42Updated 8 months ago
• PalamaraLab / ASMC
  Ascertained Sequentially Markovian Coalescent
  ☆16Updated 7 months ago
• tskit-dev / tsdate
  Infer the age of ancestral nodes in a tree sequence.
  ☆21Updated 3 weeks ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• singhal / popgen_tutorial
  ☆11Updated 5 years ago
• pdimens / LepWrap
  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
  ☆13Updated last year
• popgenmethods / ldpop
  Two locus likelihoods and ARGs under changing population size
  ☆14Updated 2 months ago
• rhysf / Diamond2GO
  ☆20Updated 10 months ago
• gwct / referee
  Reference genome quality scores
  ☆21Updated 4 years ago
• petrelharp / popbio
  a short graduate population biology course
  ☆12Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 10 months ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 3 years ago
• morispi / LRez
  Standalone tool and library allowing to work with barcoded linked-reads
  ☆12Updated 6 months ago
• bcgsc / RAILS
  🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling
  ☆27Updated last year
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• VGP / vgp-tools
  ☆28Updated 2 months ago
• bwringe / hybriddetective
  ☆14Updated 2 years ago
• yanboANU / Kmer2SNP
  ☆26Updated 3 years ago
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated 2 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 4 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated last year
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆18Updated last month
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• avaughn271 / AdmixtureBayes
  ☆20Updated 8 months ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆28Updated 2 weeks ago