CoalHMM
☆22Nov 4, 2013Updated 12 years ago
Alternatives and similar repositories for coalhmm
Users that are interested in coalhmm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- ☆13Apr 30, 2019Updated 6 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 5 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- AncestralClust☆11Jul 9, 2025Updated 8 months ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- ☆10Apr 20, 2018Updated 7 years ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated last month
- A pipeline that accepts a VCF file to run through Admixture☆64Jan 2, 2025Updated last year
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆11Mar 20, 2026Updated last week
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- Sex assignment through coverage☆20May 23, 2025Updated 10 months ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- A toolbox for C++ devs wanting to build geospatial population genetics simulators !☆11May 4, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- ☆48Oct 17, 2025Updated 5 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- Assembly statistic visualisation☆95Dec 22, 2023Updated 2 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 9 months ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆16Jul 7, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- reference-free transcriptome assembly for short and long reads☆108Mar 13, 2026Updated 2 weeks ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 4, 2026Updated 3 weeks ago
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 8 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Jan 26, 2022Updated 4 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 11 months ago
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated 2 months ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago