iqbal-lab-org / varifier
Variant call verification
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for varifier
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Read contamination removal☆24Updated 9 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 4 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- software to identify primers that can distinguish genomes☆20Updated this week
- transposable element typing pipeline☆16Updated 8 months ago
- Plasmid analysis using rearrangement distances☆29Updated 2 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆39Updated 4 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated this week
- Simulate mutations in genomes☆15Updated 4 years ago
- ☆12Updated 3 years ago
- ☆15Updated 4 years ago
- Remove human reads from a sequencing run☆23Updated last month
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- Variant call adjudication☆16Updated 4 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆21Updated 2 years ago
- A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆12Updated 6 months ago
- ☆17Updated 4 months ago
- ☆15Updated 6 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆23Updated this week
- Colinear block visualisation tool☆30Updated 9 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆17Updated 4 months ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆31Updated 3 weeks ago