GuyBaele / SpreadGLLinks
Main development repository for SpreadGL
☆19Updated last year
Alternatives and similar repositories for SpreadGL
Users that are interested in SpreadGL are comparing it to the libraries listed below
Sorting:
- SARs-CoV-2 Primer schemes☆16Updated 5 months ago
- ☆18Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated last month
- Fast viral consensus genome reconstruction☆25Updated 3 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆30Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Inference of putative transmission phylogenetic clusters☆11Updated 5 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- ☆26Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Read contamination removal☆25Updated last year
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 11 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆23Updated last month
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated 3 weeks ago
- Add biological annotations to variants in a given VCF file.☆32Updated 4 years ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Remove human reads from a sequencing run☆40Updated 3 months ago
- map Illumina metagenomes to genomes!☆38Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Genome size estimation from long read overlaps☆62Updated last month
- Find Unique genomic Regions☆30Updated this week
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago