Main development repository for SpreadGL
☆24Jun 18, 2026Updated 3 months ago
Alternatives and similar repositories for SpreadGL
Users that are interested in SpreadGL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jul 2, 2026Updated 2 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 11 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆45Jul 2, 2026Updated 2 months ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆45Sep 4, 2026Updated 2 weeks ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆39Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 2 months ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆22Aug 23, 2023Updated 3 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- ☆38Jan 12, 2026Updated 8 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆48Updated this week
- ☆20Jun 15, 2024Updated 2 years ago
- ☆11Dec 20, 2022Updated 3 years ago
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆19Nov 24, 2025Updated 9 months ago
- ☆62Aug 20, 2026Updated 3 weeks ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- Data and scripts for Zika virus tutorial☆10Jul 21, 2026Updated last month
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆57Jul 24, 2025Updated last year
- Quality control for phylogenetic analyses☆13Aug 31, 2026Updated 2 weeks ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- ☆22Jun 1, 2026Updated 3 months ago
- Phylogenetic tree library for JavaScript/Node.js☆39Nov 16, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆56Dec 5, 2025Updated 9 months ago
- A tool for exploring large trees in the browser☆134Sep 4, 2026Updated 2 weeks ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆19Jun 26, 2026Updated 2 months ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆34Oct 25, 2013Updated 12 years ago
- Tutorial on Bayesian phylogenetic analysis☆53Sep 21, 2017Updated 8 years ago
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 5 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 5 months ago
- ☆13Aug 4, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- viral-ngs: complete pipelines☆75Updated this week
- ☆24Jul 25, 2026Updated last month
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- Bayesian Evolutionary Analysis Sampling Trees☆247Updated this week
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Aug 12, 2026Updated last month
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 8 months ago