SamStudio8 / goldilocksLinks
Locating genetic regions that are "just right"
☆17Updated 9 years ago
Alternatives and similar repositories for goldilocks
Users that are interested in goldilocks are comparing it to the libraries listed below
Sorting:
- blast, shmlast☆21Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Updated 8 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Updated 3 months ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- ☆18Updated 8 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- The python binding for D4 format☆16Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- ☆10Updated 7 years ago
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- Convert sequence IDs between ucsc/refseq/genbank☆16Updated 7 years ago
- Visualization tool for (meta)genome assembly graphs☆22Updated this week
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Updated 4 years ago
- Pipeline for poreathon☆14Updated 11 years ago