Alternatives and similar repositories for SV-Pop

Users that are interested in SV-Pop are comparing it to the libraries listed below

• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 6 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆49Updated 4 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last year
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• Nextomics / nextsv
  ☆36Updated last year
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆52Updated 4 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• farhangus / Sniffles2_plot
  ☆32Updated last year
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆35Updated 5 months ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆25Updated 5 months ago
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆29Updated 6 years ago
• timplab / nanopore-methylation-utilities
  ☆30Updated 4 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 8 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆41Updated 5 months ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆46Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 4 years ago
• sansubs / vcf2pop
  ☆29Updated last year
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 5 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆18Updated 5 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆34Updated 5 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆35Updated 2 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆38Updated 9 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 5 years ago
• caulilin / QTG_Seq
  ☆22Updated 7 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆38Updated last year