mattravenhall / SV-PopLinks
Upscaling SV detection to a multi-population level.
☆22Updated 4 years ago
Alternatives and similar repositories for SV-Pop
Users that are interested in SV-Pop are comparing it to the libraries listed below
Sorting:
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- Structural variant merging tool☆52Updated 10 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆30Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- toolkit to process gtf files☆17Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆51Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- SV genotyping with long reads☆39Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆10Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- Invertory of TE-gene isoforms☆11Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 8 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Detection and genotyping of structural variants☆18Updated 2 months ago
- ☆34Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago