Alternatives and similar repositories for SV-Pop

Users that are interested in SV-Pop are comparing it to the libraries listed below

• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆53Updated last year
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆33Updated last month
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆18Updated 5 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last month
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 8 months ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated last month
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆34Updated 5 years ago
• farhangus / Sniffles2_plot
  ☆31Updated last year
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 3 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 8 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆17Updated 6 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆39Updated 2 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆22Updated last month
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 4 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• Nextomics / nextsv
  ☆36Updated last year
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 4 years ago
• caulilin / QTG_Seq
  ☆22Updated 6 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆11Updated last year
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 3 years ago
• mcstitzer / maize_v4_TE_annotation
  scripts and intermediate files used to annotate TEs in Jiao et al.
  ☆35Updated 7 years ago
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆27Updated last week
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆24Updated 4 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated last year