mattravenhall / SV-Pop
Upscaling SV detection to a multi-population level.
☆21Updated 4 years ago
Alternatives and similar repositories for SV-Pop:
Users that are interested in SV-Pop are comparing it to the libraries listed below
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆27Updated last month
- ☆31Updated 5 years ago
- Structural variant merging tool☆49Updated 4 months ago
- ☆33Updated 9 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- A repo contains historical and updated MTEC libraries.☆17Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Variant annotation and merging pipeline☆31Updated last week
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- SV genotyping with long reads☆40Updated last year
- Customized codes used in Tibetan wheat sequencing project.☆13Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- toolkit to process gtf files☆16Updated 3 years ago
- ☆10Updated 10 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- ☆42Updated 8 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆13Updated 7 months ago