NAMlab / DeepCRELinks
Deep learning the cis-regulatory code for gene expression in selected model plants
☆20Updated last year
Alternatives and similar repositories for DeepCRE
Users that are interested in DeepCRE are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 10 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- scripts used to download and analyze insect assemblies from GenBank☆15Updated 4 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆17Updated 7 months ago
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- visual analysis of your VCF files☆36Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- ☆17Updated 2 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- ☆22Updated 3 weeks ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆31Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- MGKit: Metagenomics Framework☆16Updated 2 years ago
- Machine learning workshop materials☆15Updated 11 months ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 5 months ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆13Updated 2 years ago
- Species-aware DNA language models capture regulatory elements and their evolution☆24Updated 2 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆32Updated 6 years ago
- ☆20Updated 3 years ago
- A list of awesome awesomeness related to bioinformatics and associated fields☆41Updated 7 months ago
- FamDB file format library and utilities☆31Updated last month
- Scoring GT/AG sites for improving spliced alignment☆46Updated last month
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 6 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 10 months ago
- ☆17Updated 3 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 3 weeks ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago