For when you just need a coverage plot.
☆11Mar 26, 2021Updated 5 years ago
Alternatives and similar repositories for fastcov
Users that are interested in fastcov are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Dec 12, 2025Updated 3 months ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 3 months ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Sep 4, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆18Feb 11, 2026Updated last month
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 4 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated last year
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Jan 3, 2025Updated last year
- A script to re-color a FigTree saved Nexus file☆13Jan 29, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 3 months ago
- ☆30Feb 4, 2026Updated last month
- A proof of concept daisy-chaining Nextflow workflows☆31Mar 10, 2026Updated 2 weeks ago
- GWAS Survival Package in R☆13Nov 16, 2023Updated 2 years ago
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 3 weeks ago
- ☆11Jun 29, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Arduino code for a flaming torch☆14Feb 1, 2026Updated last month
- A Nextflow workflow for HLA typing using HLA-HD☆14Jul 3, 2024Updated last year
- Influenza genome analysis Nextflow workflow☆31Sep 15, 2025Updated 6 months ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 10 months ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Targeted genotyper for complex polymorphic genes☆38Updated this week
- Software for ancestry estimation in unrelated individuals☆24Jan 31, 2026Updated last month
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15May 22, 2025Updated 10 months ago
- Statistical inference of recent positive selection using IBD segments☆14Sep 23, 2025Updated 6 months ago
- ☆20Apr 2, 2025Updated 11 months ago
- Parse GFF3 into Pandas dataframes☆30Feb 21, 2024Updated 2 years ago
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 6 months ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Jan 5, 2026Updated 2 months ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Aug 6, 2025Updated 7 months ago