🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species
☆46Jun 14, 2026Updated this week
Alternatives and similar repositories for OpenSpliceAI
Users that are interested in OpenSpliceAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🔎 wheeler graph recognition algorithm, visualization and generation☆21Jul 7, 2023Updated 2 years ago
- 👶🏼🍼 a RPG game modified from a unity 2D game kit☆22Sep 20, 2023Updated 2 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆61Feb 26, 2025Updated last year
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 3 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124May 4, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21May 17, 2026Updated 3 weeks ago
- Kessler is a simulation environment loosely modeled after our internal project PsiBee and the external project Fuzzy Asteroids. The game …☆15Aug 13, 2025Updated 10 months ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago
- Website for checking the SpliceAI, Pangolin, and other predictor scores for variant(s) of interest.☆33Updated this week
- ☆12Jun 15, 2023Updated 3 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Pangenome-Informed Genome Assembly (PIGA) workflow for population-scale diploid genome assembly☆39Apr 16, 2026Updated 2 months ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 4 months ago
- Collaborative and Reproducible Data Science in R☆33Dec 10, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆18Mar 2, 2026Updated 3 months ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 7 months ago
- Scoring GT/AG sites for improving spliced alignment☆55Nov 10, 2025Updated 7 months ago
- High throughput tool for tall and wide multiple sequence alignment.☆30Jun 8, 2026Updated last week
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Apr 17, 2026Updated last month
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆25Jun 7, 2026Updated last week
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Mar 19, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).☆24May 31, 2026Updated 2 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 7 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 4 months ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10Jun 4, 2026Updated last week
- 📊 An R package of RNA-seq workflow☆16May 4, 2022Updated 4 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆23May 16, 2026Updated last month
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Software for linkage disequilibrium graphical models☆17Apr 6, 2025Updated last year
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 2 months ago
- ☆19Jun 30, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆12Nov 14, 2025Updated 7 months ago