Kuanhao-Chao / OpenSpliceAILinks
🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species
☆21Updated last week
Alternatives and similar repositories for OpenSpliceAI
Users that are interested in OpenSpliceAI are comparing it to the libraries listed below
Sorting:
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last week
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆19Updated 4 months ago
- ☆25Updated 3 weeks ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- ☆28Updated 7 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆16Updated 3 weeks ago
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 4 months ago
- Tools for merging Tandem Repeat VCF files☆29Updated 2 months ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Rapid and accurate ancestry inference using SNVs.☆19Updated last month
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last month
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- v2.x of the microassembly based somatic variant caller☆24Updated last month
- ☆26Updated last week
- Automatised pipeline of ConsensuSV workflow.☆23Updated last year
- ☆18Updated 3 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated last month
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year