Alternatives and similar repositories for OpenSpliceAI

Users that are interested in OpenSpliceAI are comparing it to the libraries listed below

• tkzeng / GeneBayes
  ☆31Updated 7 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 10 months ago
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆50Updated 3 months ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆35Updated 3 months ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆16Updated 2 years ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆59Updated 11 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆45Updated 5 months ago
• Xinglab / rMATS-long
  ☆34Updated 2 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆72Updated last month
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆28Updated last month
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated last week
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆64Updated last year
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆34Updated 2 years ago
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆31Updated 10 months ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• KolmogorovLab / minda
  ☆27Updated 9 months ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆40Updated last year
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆41Updated last year
• guigolab / LyRic
  Long RNA-seq analysis workflow
  ☆21Updated 3 months ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆38Updated 9 months ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆37Updated last year
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 11 months ago
• hoffmangroup / polyidus
  Polyidus provides a framework to catch chimeric DNA sequences with a tale of python
  ☆10Updated 2 years ago