☆15Jan 18, 2023Updated 3 years ago
Alternatives and similar repositories for ATACgraph
Users that are interested in ATACgraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- scEntropy method and scEGMM framework☆18Oct 26, 2019Updated 6 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Chromatin State Maps in Mouse☆24May 16, 2018Updated 8 years ago
- A simple Bisulfite FastQ Read Simulator (BiQRS)☆14Jun 11, 2026Updated 3 months ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆23Aug 20, 2023Updated 3 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- personal genome constructor☆11May 29, 2025Updated last year
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- Semi-parametric approach for the inference of gene regulatory networks from time series of expression data☆29Jun 23, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Apr 24, 2023Updated 3 years ago
- Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)☆21Jul 10, 2024Updated 2 years ago
- Analysis pipeline for CUT&TAG data☆25Sep 2, 2020Updated 6 years ago
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- A listing of the commands, protocols and other notes that I take on a daily basis☆11Oct 25, 2023Updated 2 years ago
- Deep learning the cis-regulatory code for gene expression in selected model plants☆26Mar 15, 2024Updated 2 years ago
- Gene Set Clustering based on Functional annotation☆24May 3, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Convert HAL to VG☆24Updated this week
- DMR Identification Tool☆35Jul 6, 2023Updated 3 years ago
- Group-wise release of ProtiCelli, including core code deveplopment.☆26Updated this week
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12May 31, 2023Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 8 months ago
- Raman2RNA code base.☆16Sep 8, 2023Updated 3 years ago
- ☆56Jan 4, 2023Updated 3 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python library to identify Identical By State regions☆25Mar 19, 2023Updated 3 years ago
- LORIS: A LOgistic Regression-based Immunotherapy-response Score☆16Nov 18, 2024Updated last year
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 7 years ago
- ☆12Nov 7, 2022Updated 3 years ago
- Detecting sites of genomic enrichment☆204Sep 6, 2026Updated last week
- ☆51Feb 7, 2024Updated 2 years ago
- Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.☆29May 24, 2023Updated 3 years ago