RitataLU / ATACgraphLinks
☆15Updated 2 years ago
Alternatives and similar repositories for ATACgraph
Users that are interested in ATACgraph are comparing it to the libraries listed below
Sorting:
- ☆34Updated this week
- ☆23Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆23Updated 8 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆17Updated last year
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 6 months ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- ☆22Updated 5 years ago
- ☆37Updated 6 years ago
- ☆38Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Extract Sequence from Genome According to Annotation File☆38Updated 7 months ago
- ☆11Updated 6 months ago
- Pan-transcriptomic phenotyping☆19Updated last week
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Script used to identify de novo variants from sequencing data.☆11Updated 8 years ago
- Define regions in the genome☆33Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- Micro DNA identification☆24Updated 4 years ago
- Peak calling for 4C data☆13Updated 7 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- ☆22Updated 2 years ago
- An R package for time course sequencing data analysis☆20Updated 2 years ago