Alternatives and similar repositories for ATACgraph

Users that are interested in ATACgraph are comparing it to the libraries listed below

• plantformatics / Socrates
  ☆23Updated 9 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• Xinglab / rMATS-long
  ☆34Updated last month
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆23Updated 6 years ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆15Updated 4 years ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆19Updated last month
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆35Updated 3 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 6 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆46Updated last year
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 7 months ago
• dozmorovlab / HiCcompare
  Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…
  ☆23Updated 2 years ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆25Updated 4 months ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆37Updated last year
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• hellbelly / BS-Snper
  ☆39Updated 4 years ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆38Updated 8 months ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• WGLab / SCOTCH
  Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…
  ☆17Updated last week
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆26Updated last year
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆22Updated last year
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆21Updated 2 weeks ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆42Updated last year
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆24Updated 4 years ago