songlab-cal / swga2
☆17Updated last year
Alternatives and similar repositories for swga2:
Users that are interested in swga2 are comparing it to the libraries listed below
- Genome size estimation from long read overlaps☆52Updated last week
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆14Updated last year
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 weeks ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆34Updated last month
- Resolving Species Level Classification Using Emu☆12Updated 10 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated 3 months ago
- ☆17Updated 10 months ago
- Evaluating Nanopore-based bacterial variant calling☆18Updated 4 months ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Intra-species bacterial contamination detection☆25Updated 2 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 4 months ago
- Convert genbank files to a swath of other formats☆17Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 2 weeks ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 4 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆24Updated last month
- consensus approach for community profiling with nanopore amplicon sequencing data☆14Updated 6 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 7 months ago
- Generate basic stats for an assembly.☆11Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- ☆20Updated last month