☆18Jul 27, 2023Updated 2 years ago
Alternatives and similar repositories for swga2
Users that are interested in swga2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last week
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated last month
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆20May 21, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- phylogenetic networks using ggplot2 and ggtree☆11May 5, 2026Updated 3 weeks ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆26Jan 28, 2025Updated last year
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated 2 months ago
- ☆12Mar 11, 2025Updated last year
- An R Package for Multiplex PCR Primer Design and Analysis☆31Jul 12, 2025Updated 10 months ago
- a tool for designing primer panels for multiplex PCR.☆108Feb 5, 2024Updated 2 years ago
- ☆12Dec 22, 2025Updated 5 months ago
- ☆12Sep 4, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆27Feb 6, 2023Updated 3 years ago
- Primalscheme3. Generation of highly multiplex primerschemes☆22Dec 4, 2025Updated 5 months ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Counterfactual Inference by Machine Learning and Attribution Models☆15Aug 24, 2023Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆43Sep 29, 2025Updated 8 months ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 10 months ago
- A tool for removing redundant genomes from a set of assemblies☆81May 6, 2026Updated 3 weeks ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆43Nov 20, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- design common and specific primer for LAMP using the whole genome☆15Feb 12, 2026Updated 3 months ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- ☆11Dec 24, 2024Updated last year
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 9 months ago
- ☆22Mar 5, 2025Updated last year
- An R function to compute Concordance Factors from SNP datasets☆16Dec 4, 2025Updated 5 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated 2 weeks ago
- ☆15Mar 10, 2026Updated 2 months ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆23Aug 22, 2025Updated 9 months ago
- ☆10Dec 20, 2022Updated 3 years ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆34Jun 3, 2025Updated 11 months ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆63Jan 22, 2026Updated 4 months ago
- Influenza genome analysis Nextflow workflow☆32Sep 15, 2025Updated 8 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Mar 5, 2018Updated 8 years ago
- ☆16Jan 10, 2023Updated 3 years ago