Alternatives and similar repositories for swga2

Users that are interested in swga2 are comparing it to the libraries listed below

• JMencius / LongBow
  Basecalling configuration prediction through FASTQ files
  ☆31Updated 6 months ago
• mathjeff / Mapper
  Genomic sequence aligner
  ☆33Updated last month
• genomic-medicine-sweden / TRANA
  A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
  ☆16Updated last week
• treangenlab / Olivar
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆33Updated 2 weeks ago
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• jmcbroome / autolin
  Repository containing a method for automatically identifying pathogen lineages from a phylogeny.
  ☆17Updated 2 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 5 months ago
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆22Updated 4 months ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated last week
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆24Updated 2 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated last month
• moshi4 / pybarrnap
  Python implementation of barrnap (Bacterial ribosomal RNA predictor)
  ☆22Updated 10 months ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 3 months ago
• gcgreenberg / LexicHash
  A novel method for sequence similarity estimation
  ☆28Updated last year
• sanger-pathogens / seroba
  k-mer based Pipeline to identify the Serotype from Illumina NGS reads
  ☆25Updated 2 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated last year
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆33Updated 2 months ago
• willem-stock / CONCOMPRA
  consensus approach for community profiling with nanopore amplicon sequencing data
  ☆15Updated last year
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆23Updated 2 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆44Updated 3 months ago
• husonlab / phylosketch2
  Sketch phylogenetic trees and networks
  ☆23Updated last week
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 7 years ago
• kangxiongbin / HyLight
  HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…
  ☆12Updated last year
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• dhelekal / CaveDive
  ☆18Updated last year
• esteinig / brick
  BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons
  ☆19Updated 8 months ago
• DNKonanov / Snapper
  snapper
  ☆13Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago