jonas-fuchs / BAMdashLinks
create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
☆54Updated last month
Alternatives and similar repositories for BAMdash
Users that are interested in BAMdash are comparing it to the libraries listed below
Sorting:
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated 2 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆36Updated 2 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated this week
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 9 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated last month
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 months ago
- An efficient CLI to extract sequences from the SRA☆112Updated last month
- A versatile toolkit for k-mers with taxonomic information☆79Updated 3 weeks ago
- ☆29Updated 3 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆58Updated last year
- An R package designed for drawing gene arrow maps☆88Updated last month
- Interactive phylogenetic tree viewer/editor☆48Updated 2 years ago
- A program for detection of tRNA genes☆67Updated 2 years ago
- A list of awesome awesomeness related to bioinformatics and associated fields☆41Updated 6 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 10 months ago
- tree visualization for tree + annotation data☆40Updated 3 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated 3 weeks ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 7 months ago
- Influenza genome analysis Nextflow workflow☆28Updated this week
- FastOMA is a scalable software package to infer orthology relationship.☆82Updated 2 weeks ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆27Updated last month
- ☆75Updated this week
- Protein Alignment and Detection Interface☆60Updated last year
- Python bindings for the TaxonKit library☆40Updated 2 months ago