jonas-fuchs / BAMdashLinks
create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
☆54Updated 2 months ago
Alternatives and similar repositories for BAMdash
Users that are interested in BAMdash are comparing it to the libraries listed below
Sorting:
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆39Updated last week
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 11 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated this week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 3 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ☆29Updated 4 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated last month
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- A program for detection of tRNA genes☆71Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated this week
- ☆27Updated 5 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 4 months ago
- UFCG: Universal Fungal Core Genes☆34Updated 3 months ago
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- A list of awesome awesomeness related to bioinformatics and associated fields☆41Updated 7 months ago
- An R package designed for drawing gene arrow maps☆91Updated last month
- tree visualization for tree + annotation data☆42Updated 4 months ago