jonas-fuchs / BAMdashLinks
create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
☆57Updated last month
Alternatives and similar repositories for BAMdash
Users that are interested in BAMdash are comparing it to the libraries listed below
Sorting:
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated 2 weeks ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Updated 2 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Updated last week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Updated last year
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆53Updated last year
- Influenza genome analysis Nextflow workflow☆31Updated 4 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 4 months ago
- A package to annotate protein sequences☆61Updated 11 months ago
- Interactive phylogenetic tree viewer/editor☆49Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- tree visualization for tree + annotation data☆49Updated 7 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- ☆52Updated 9 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆23Updated 2 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated 2 weeks ago
- ☆29Updated 4 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆67Updated last year
- A list of awesome awesomeness related to bioinformatics and associated fields☆42Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- ☆28Updated 5 years ago
- ☆31Updated last year