create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
☆57Dec 12, 2025Updated 6 months ago
Alternatives and similar repositories for BAMdash
Users that are interested in BAMdash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 10 months ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆22Jan 3, 2025Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Mar 7, 2025Updated last year
- ☆15Jan 28, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- µbinfie blog☆19Jul 21, 2025Updated 10 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 7 months ago
- ☆18Apr 28, 2026Updated last month
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆45May 8, 2026Updated last month
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 8 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 5 months ago
- ☆27Mar 30, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆39Jul 11, 2025Updated 11 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated 3 weeks ago
- Centromere mapping and annotation pipeline☆27Jun 3, 2026Updated last week
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Jul 8, 2024Updated last year
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46May 29, 2026Updated 2 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆152Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Nextflow pipeline for running synteny analysis.☆16Jun 7, 2026Updated last week
- Tools for working with Variant Call Format files.☆12Jan 22, 2026Updated 4 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆24May 8, 2024Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- A Rust-based library for phylogenetic analysis and manipulation☆20May 13, 2026Updated last month
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆30Updated this week
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆123Apr 28, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated this week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆70Nov 24, 2025Updated 6 months ago
- A genome completeness evaluation tool based on miniprot☆245Sep 18, 2025Updated 8 months ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆38Oct 9, 2025Updated 8 months ago
- bioinformatics toolkit in rust☆107May 14, 2026Updated last month
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated last month
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 7 months ago