☆43Jan 19, 2024Updated 2 years ago
Alternatives and similar repositories for CNVcaller
Users that are interested in CNVcaller are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RAGNAROK is a nextflow-implemented pipeline for rapid genome annotation using multiple lines of evidence.☆15Oct 6, 2026Updated 3 weeks ago
- Simple and fast algorithm for selecting core subset applied to large genotype dataset☆10Jun 3, 2019Updated 7 years ago
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 3 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆112Jun 20, 2026Updated 4 months ago
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆17Oct 8, 2025Updated last year
- Classify chimeric reads based on unique kmer contents☆14Aug 30, 2026Updated 2 months ago
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆27Feb 23, 2026Updated 8 months ago
- Chromosome conformation capture resolved near complete genome assembly of broomcorn millet☆11Sep 13, 2018Updated 8 years ago
- Customized codes used in Tibetan wheat sequencing project.☆13Oct 18, 2022Updated 4 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆53Sep 22, 2025Updated last year
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An ultra-fast and efficient genomic tool for coverage calculation☆174Jun 9, 2026Updated 4 months ago
- a Semi-automated pipeline for assembling T2T genome☆30Oct 16, 2025Updated last year
- ☆45May 8, 2024Updated 2 years ago
- Enumerating bubbles in pangenome graphs☆16Oct 19, 2026Updated last week
- ☆37Aug 3, 2026Updated 2 months ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 10 years ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆72Jul 29, 2026Updated 3 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆108Jun 13, 2022Updated 4 years ago
- A library for running k-mers based GWAS☆131Oct 29, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Aug 30, 2026Updated 2 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- ☆34Apr 7, 2025Updated last year
- ☆23Aug 8, 2024Updated 2 years ago
- ☆11Dec 12, 2014Updated 11 years ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 5 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆288Aug 10, 2026Updated 2 months ago
- ☆45Dec 29, 2025Updated 10 months ago
- Application of pan-genome for population☆123Oct 26, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 4 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Make colorful identity heatmaps of genomic sequence☆140May 24, 2024Updated 2 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆211Jul 16, 2026Updated 3 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 4 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago