☆43Jan 19, 2024Updated 2 years ago
Alternatives and similar repositories for CNVcaller
Users that are interested in CNVcaller are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆27Feb 23, 2026Updated 6 months ago
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆17Oct 8, 2025Updated 10 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆52Sep 22, 2025Updated 11 months ago
- Customized codes used in Tibetan wheat sequencing project.☆13Oct 18, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- ☆45May 8, 2024Updated 2 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆109Jun 20, 2026Updated 2 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆107Jun 13, 2022Updated 4 years ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆20Aug 16, 2026Updated 2 weeks ago
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- ☆45Dec 29, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 3 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆279Aug 10, 2026Updated 3 weeks ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 5 years ago
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated 10 months ago
- Application of pan-genome for population☆121Oct 26, 2025Updated 10 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆182Apr 17, 2026Updated 4 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆175Jun 9, 2026Updated 2 months ago
- Polyploid-aware, multiscale super-pangenome graph strategy☆21Oct 29, 2025Updated 10 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 4 months ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆210Jul 16, 2026Updated last month
- ☆11Aug 19, 2026Updated last week
- ☆42May 19, 2025Updated last year
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- a Semi-automated pipeline for assembling T2T genome☆29Oct 16, 2025Updated 10 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- ANI based satellite annotation☆29Aug 6, 2026Updated 3 weeks ago
- ☆33Apr 7, 2025Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year