JiangYuLab / CNVcallerLinks
☆43Updated last year
Alternatives and similar repositories for CNVcaller
Users that are interested in CNVcaller are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- ☆34Updated 10 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 10 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 9 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆28Updated 6 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Updated 11 months ago
- ☆24Updated 8 years ago
- ☆40Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆42Updated 2 months ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- ☆30Updated 6 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated last year
- a Semi-automated pipeline for assembling T2T genome☆19Updated 2 months ago
- ☆24Updated 2 years ago
- A program to call variants from genome alignment☆81Updated 2 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last month
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated last month
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆42Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated last year
- ☆44Updated 8 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆45Updated 2 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago