JiangYuLab / CNVcallerLinks
☆42Updated last year
Alternatives and similar repositories for CNVcaller
Users that are interested in CNVcaller are comparing it to the libraries listed below
Sorting:
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- ☆37Updated last month
- Bulked-Segregant Analysis using vcf file with or without parents☆29Updated 8 months ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆37Updated 2 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 11 months ago
- a Semi-automated pipeline for assembling T2T genome☆20Updated this week
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Updated last year
- ☆25Updated 3 years ago
- ☆24Updated 2 years ago
- ☆30Updated 7 months ago
- ☆42Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago
- A machine learning-based genotyping tool for structural variation in short reads☆22Updated 4 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 3 months ago
- ☆40Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 10 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 2 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Useful bioinformatic scripts☆58Updated 9 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- A program to call variants from genome alignment☆81Updated 4 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 7 months ago