JiangYuLab / CNVcallerLinks
☆42Updated 2 years ago
Alternatives and similar repositories for CNVcaller
Users that are interested in CNVcaller are comparing it to the libraries listed below
Sorting:
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- ☆43Updated 5 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- ☆32Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆36Updated last year
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆24Updated 8 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated last year
- ☆41Updated 2 years ago
- ☆44Updated last year
- ☆18Updated 3 years ago
- ☆28Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- HiCAT new project☆30Updated 8 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- ☆14Updated 7 months ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- Automated pipeline for running CoalHMM☆13Updated last week
- Centromics: visualing centromeres with multiple omics data☆25Updated 10 months ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- ☆25Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆44Updated 3 months ago
- The IntroBlocker ancestry inference algorithm☆17Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 2 months ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆82Updated this week
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago