erilu / single-cell-rnaseq-analysis
A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, custom visualizations, and group-wise analysis of tumor infiltrating immune cells using data from Ishizuka et al. Nature 2019.
☆21Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for single-cell-rnaseq-analysis
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆48Updated last week
- SCDC☆42Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆28Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- Code repository for single cell RNA-seq☆32Updated 4 years ago
- Functions for single cell data analysis☆27Updated 3 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆13Updated last year
- Module 4 for HKU Single-cell Workshop☆12Updated 3 years ago
- scRNA analysis of public dataset on bladder cancer☆14Updated 8 months ago
- ☆18Updated 8 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- ☆58Updated 5 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆53Updated 3 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Updated 10 months ago
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆27Updated last year
- repository for the single cell RNA-Seq workshop☆25Updated 3 years ago
- Analysis notebooks and data for AML hierarchies paper☆15Updated last year
- scWGCNA☆55Updated 2 years ago
- Mollecular Functional Portraits☆36Updated 7 months ago
- ☆48Updated 4 months ago
- ☆59Updated 4 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- ☆53Updated 3 years ago