Euro-BioImaging / EuBI-BridgeLinks
A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.
☆11Updated last week
Alternatives and similar repositories for EuBI-Bridge
Users that are interested in EuBI-Bridge are comparing it to the libraries listed below
Sorting:
- ☆12Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Accurate and efficient spot detection for microscopy data☆99Updated last month
- A relabeling tool for tiled segmentation with Dask☆16Updated 11 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- ☆12Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- ☆87Updated 5 months ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated last month
- QuPath extension for Cellsparse☆19Updated 4 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆100Updated last week
- Visualizing feature measurements on label images in napari☆10Updated last year
- ☆51Updated 4 months ago
- StarDist plugin for napari☆39Updated last year
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- Browse your OMERO database from within napari.☆38Updated 2 weeks ago
- A minimal Python package for reading and validating OME-Zarr (meta)data☆33Updated this week
- ☆15Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆33Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- Command-line client for Fractal☆46Updated last week
- ☆20Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 4 months ago
- ☆34Updated last year
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Raw format to OME-TIFF converter☆55Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 4 months ago