A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.
☆29Jun 9, 2026Updated this week
Alternatives and similar repositories for EuBI-Bridge
Users that are interested in EuBI-Bridge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Apr 30, 2023Updated 3 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- An introduction to OME-Zarr for big bioimaging data☆27Jun 2, 2026Updated 2 weeks ago
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- ☆11Nov 15, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 7 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 6 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Jun 1, 2026Updated 2 weeks ago
- Galaxy Image Analysis is an ELIXIR Service for computer-based image analysis in Galaxy.☆22May 11, 2026Updated last month
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 3 months ago
- Data-driven signal detection for unbiased scRNA-seq data analysis☆23Jan 22, 2026Updated 4 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 8 months ago
- Spatial omics analysis and visualization library☆24Jun 8, 2026Updated last week
- 3D segmentation for cells and organoids of 3D multichannel images☆32Jun 24, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scientific Dataset Quality Control and Data Exploration Tool☆23Updated this week
- Package for the analysis of Transcripts outside segmented cells in ST data☆30Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- CUDA Tile programming in Julia☆75Updated this week
- ☆34Jun 8, 2026Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆125May 1, 2026Updated last month
- Java implementation of the Zarr Specification☆20May 4, 2026Updated last month
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆71Jun 8, 2026Updated last week
- ☆15Oct 24, 2025Updated 7 months ago
- Sparse Tensor Programming in Python powered by Finch.jl☆23Jun 8, 2026Updated last week
- A napari plugin for zarr backed OME-NGFF images☆52May 28, 2026Updated 2 weeks ago
- ☆27Jun 17, 2025Updated 11 months ago
- Morphological features from images and masks made easy.☆47Updated this week
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆15Dec 15, 2025Updated 6 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆15Updated this week
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Remote (network) control robotics and vision automation standard☆17May 12, 2026Updated last month
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated 10 months ago
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- A framework for rapidly detecting and classifying objects and behaviour from motion☆23May 5, 2026Updated last month
- Bringing core concepts from anywidget to R☆21Aug 10, 2025Updated 10 months ago
- Template for building your own portfolio☆27Jul 2, 2025Updated 11 months ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago