Euro-BioImaging / EuBI-BridgeLinks
A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.
☆18Updated 2 weeks ago
Alternatives and similar repositories for EuBI-Bridge
Users that are interested in EuBI-Bridge are comparing it to the libraries listed below
Sorting:
- ☆13Updated 2 months ago
- Evaluating the quality of a cell segmentation method without reference.☆13Updated 6 months ago
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- Scientific Dataset Quality Control and Data Exploration Tool☆21Updated this week
- QuPath extension for Cellsparse☆19Updated 9 months ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- Development of PICASSO plugin for napari☆16Updated 3 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Updated 2 months ago
- ☆12Updated last year
- A relabeling tool for tiled segmentation with Dask☆17Updated last year
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Updated 8 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated last week
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆38Updated last week
- StarDist plugin for napari☆38Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 5 months ago
- ☆15Updated 3 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated 2 months ago
- ☆22Updated 7 months ago
- A template repo used to make new napari plugins☆31Updated last week
- dask empowered fast4dreg☆15Updated last year
- ☆92Updated 3 months ago
- ☆51Updated 9 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 4 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago