Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
☆22Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for sceQTL
Users that are interested in sceQTL are comparing it to the libraries listed below
Sorting:
- ☆19Mar 11, 2024Updated last year
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- The source code of web server TIP, including example data.☆21Mar 28, 2019Updated 6 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- An R package for Mendelian Randomization☆39Mar 27, 2024Updated last year
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Feb 20, 2026Updated last week
- ☆40Jan 13, 2026Updated last month
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.☆15Oct 3, 2024Updated last year
- ☆17Sep 28, 2022Updated 3 years ago
- The R Bioconductor package for scMAGeCK.☆13Apr 20, 2024Updated last year
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆19Apr 26, 2024Updated last year
- ☆17Apr 9, 2021Updated 4 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆39Oct 13, 2021Updated 4 years ago
- ☆17Aug 1, 2023Updated 2 years ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- ☆19Apr 8, 2025Updated 10 months ago
- ☆12May 14, 2024Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 8 months ago
- Separating the direct effects of risk factors for atherosclerotic cardiovascular disease from those mediated by type 2 diabetes☆18Mar 12, 2023Updated 2 years ago
- Code for implementing Mendelian randomization investigations☆20Nov 9, 2015Updated 10 years ago
- ☆19Jan 18, 2023Updated 3 years ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 5 months ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- ☆17Sep 17, 2019Updated 6 years ago
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- ☆15Jun 2, 2022Updated 3 years ago
- An R script to perform two sample Mendelian randomization screening (with TwoSampleMR) for a custom summary statistic against a set of su…☆33Oct 4, 2022Updated 3 years ago
- https://jinghuazhao.github.io/pQTLtools/☆23Mar 25, 2025Updated 11 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 2 years ago
- ☆27Sep 6, 2024Updated last year
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 4 months ago
- Single-cell Case Control Analysis☆53Feb 24, 2026Updated last week