Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
☆23Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for sceQTL
Users that are interested in sceQTL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- An R package for Mendelian Randomization☆39Mar 27, 2024Updated 2 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- ☆19Mar 11, 2024Updated 2 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆39Oct 13, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The source code of web server TIP, including example data.☆21Mar 28, 2019Updated 7 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆16Jan 30, 2025Updated last year
- ☆17Aug 1, 2023Updated 2 years ago
- TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.☆16Oct 3, 2024Updated last year
- ☆12May 14, 2024Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- ☆17Sep 28, 2022Updated 3 years ago
- The R Bioconductor package for scMAGeCK.☆13Apr 20, 2024Updated 2 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆25Aug 20, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Jun 29, 2022Updated 3 years ago
- ☆21Aug 26, 2024Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆45Feb 20, 2026Updated 2 months ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated 10 months ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Single-cell Case Control Analysis☆56Feb 26, 2026Updated 2 months ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆13May 30, 2023Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Mar 16, 2026Updated last month
- ☆12Jun 11, 2023Updated 2 years ago
- Code for implementing Mendelian randomization investigations☆20Nov 9, 2015Updated 10 years ago
- Code associated with the data analysis for Miyoshi & Morabito 2024☆29Jul 8, 2025Updated 9 months ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- ☆14Aug 9, 2017Updated 8 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- Data-driven signal detection for unbiased scRNA-seq data analysis☆23Jan 22, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Separating the direct effects of risk factors for atherosclerotic cardiovascular disease from those mediated by type 2 diabetes☆18Mar 12, 2023Updated 3 years ago
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- ☆43Mar 23, 2026Updated last month
- ☆43Mar 4, 2026Updated 2 months ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- ☆14Mar 2, 2020Updated 6 years ago
- MRAgent is an LLM-based tool that automates Mendelian randomization analysis, reducing manual effort by autonomously scanning literature,…☆26Jul 28, 2025Updated 9 months ago