immunogenomics / sceQTL
Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
☆19Updated last year
Alternatives and similar repositories for sceQTL:
Users that are interested in sceQTL are comparing it to the libraries listed below
- ☆15Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 3 months ago
- Spatial transcriptomics of heart tissue☆21Updated 2 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated 5 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆54Updated 2 years ago
- ☆20Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 6 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- ☆28Updated 2 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 2 months ago
- ☆53Updated 9 months ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆14Updated 7 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- ☆13Updated last year
- Functions for single cell data analysis☆31Updated 3 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 6 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆45Updated 4 months ago
- ☆50Updated 7 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- ☆18Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆18Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last week
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated 2 years ago
- ☆12Updated 4 years ago