Alternatives and similar repositories for sceQTL

Users that are interested in sceQTL are comparing it to the libraries listed below

• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆21Updated 2 years ago
• dengchunyu / scPagwas
  Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data
  ☆17Updated 6 months ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆20Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• Single-Cell-Genomics-Group-CNAG-CRG / TonsilAtlas
  Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)
  ☆28Updated 4 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 3 months ago
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆22Updated last year
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆15Updated last year
• snehamitra / SCARlink
  ☆51Updated 8 months ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆25Updated 3 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 7 months ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• horsedayday / eQTLsingle
  ☆15Updated 2 years ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• Winnie09 / Lamian
  ☆54Updated 10 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆65Updated 7 months ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆40Updated 2 years ago
• immunogenomics / GeNA
  Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…
  ☆14Updated 7 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆14Updated 3 years ago
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆47Updated 4 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 6 months ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆56Updated 3 years ago
• SaskiaFreytag / spatial_brain_cancer
  ☆13Updated last year
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆30Updated last year
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated 2 months ago