immunogenomics / sceQTLLinks
Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
☆22Updated 2 years ago
Alternatives and similar repositories for sceQTL
Users that are interested in sceQTL are comparing it to the libraries listed below
Sorting:
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Updated 2 years ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆54Updated last year
- ☆32Updated 11 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Updated 5 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆31Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆23Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- SCDC☆46Updated 7 months ago
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- ☆22Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 6 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28Updated last year
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- ☆50Updated 6 years ago
- ☆49Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- ☆17Updated 2 years ago
- ☆10Updated 2 years ago
- ☆62Updated 5 months ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆35Updated last year
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago