julienroyulaval / DESeq2-MultiBatchLinks
Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2
☆17Updated 3 weeks ago
Alternatives and similar repositories for DESeq2-MultiBatch
Users that are interested in DESeq2-MultiBatch are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆28Updated last year
- An R package to analyze single-cell V(D)J data☆28Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆29Updated 2 years ago
- ☆24Updated this week
- A single cell sequencing read simulator.☆33Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- workshop website on readthedocs☆20Updated last month
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 9 months ago
- Scripts to install as a Bioconda package for making workflows☆17Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- binned motif enrichment analysis and visualisation☆42Updated last month
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- Analysis and visualization of RNA-Seq results☆30Updated last month
- Peak caller for CUT&TAG data☆29Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- ☆20Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆39Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆25Updated last week