hamidghaedi / scRNA_seq-analysis
scRNA analysis of public dataset on bladder cancer
☆14Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for scRNA_seq-analysis
- ☆47Updated 4 months ago
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago
- Code repository for single cell RNA-seq☆32Updated 4 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆33Updated 9 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- ☆23Updated 9 months ago
- SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/☆22Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆27Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆33Updated this week
- A R package for advanced single cell data viz☆58Updated last year
- R Package for Single-Cell Dataset Processing and Visualization☆53Updated 3 years ago
- ☆33Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆46Updated this week
- Functions for single cell data analysis☆26Updated 3 years ago
- Repository for codes for the HBCA paper☆35Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆18Updated 3 years ago
- ☆57Updated 5 years ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆35Updated 2 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 3 years ago
- Using TCR and expression for sequence embedding☆48Updated last week
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆31Updated 3 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆24Updated 3 weeks ago
- ☆22Updated last year
- Mollecular Functional Portraits☆36Updated 7 months ago
- ☆58Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆20Updated 5 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 2 years ago