hamidghaedi / scRNA_seq-analysis

Related projects ⓘ

Alternatives and complementary repositories for scRNA_seq-analysis

• KChen-lab / METAFlux
  ☆48Updated 4 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / TonsilAtlas
  Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)
  ☆25Updated last month
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆32Updated 4 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆33Updated 5 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated last year
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated last year
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆36Updated 2 months ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆40Updated 2 years ago
• Xiaxy-XuLab / PanCAF
  ☆34Updated 2 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆35Updated last year
• quadbio / RNAseq_tutorial
  ☆15Updated last month
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆48Updated last week
• BioBam / scMaSigPro
  Implementation of MaSigPro for scRNA-Seq Data
  ☆13Updated 3 months ago
• erilu / single-cell-rnaseq-analysis
  A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, c…
  ☆21Updated 4 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆36Updated 2 weeks ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆59Updated last year
• StatBiomed / SingleCell-Workshop-2021
  Module 4 for HKU Single-cell Workshop
  ☆12Updated 3 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆51Updated 2 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆46Updated last year
• xiebb123456 / AutomaticCellTypeIdentification
  ☆21Updated 2 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆27Updated 3 years ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆36Updated 7 months ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆12Updated 10 months ago
• gatelabNW / csf_aging
  Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
  ☆27Updated last year
• neurorestore / DE-analysis
  ☆37Updated 3 years ago
• chensujun / scRNA
  ☆29Updated 3 years ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 2 years ago
• McGranahanLab / TcellExTRECT
  ☆46Updated last year
• NBISweden / single-cell_sib_scilifelab_2021
  SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
  ☆22Updated 3 years ago
• lkmklsmn / MitoTrace
  ☆15Updated 5 months ago