linnarsson-lab / cytograph2
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for cytograph2
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆28Updated this week
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆31Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- ☆27Updated 3 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- ☆37Updated 10 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- Information-based dimensionality reduction☆29Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- ☆34Updated 6 months ago
- ☆19Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆20Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆21Updated 2 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- ☆30Updated 6 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆26Updated 2 months ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆15Updated last year
- ☆20Updated last year