BIMSBbioinfo / mergen

Related projects ⓘ

Alternatives and complementary repositories for mergen

• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆13Updated 2 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆18Updated 2 months ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆34Updated last year
• MangiolaLaboratory / HPCell
  Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R
  ☆13Updated last week
• liuhong-jia / scAnno
  ☆23Updated last year
• tidyomics / tidyomicsBlog
  the manifesto, workshops and tutorials of the tidy transcriptomics
  ☆12Updated 6 months ago
• stemangiola / tidySummarizedExperiment
  Brings SummarizedExperiment to the tidyverse
  ☆25Updated 5 months ago
• dynverse / dynwrap
  A common data format and inference environment for single-cell trajectories 📦
  ☆15Updated last year
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆18Updated last year
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆35Updated 2 months ago
• pachterlab / concordexR
  Compute the neighborhood consolidation matrix and identify SHRs
  ☆13Updated last week
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆41Updated 3 months ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 8 months ago
• dswatson / bioplotr
  Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines
  ☆14Updated last year
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆19Updated 4 months ago
• Drinchai / BloodGen3Module
  This R package for performing module repertoire analyses and generating fingerprint representations
  ☆14Updated 3 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆29Updated last year
• drighelli / SpatialExperiment
  ☆55Updated 4 months ago
• drisso / learn2count
  Structure learning based for zero-inflated negative binomial data
  ☆11Updated 4 months ago
• Bioconductor / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 3 weeks ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆30Updated 2 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆19Updated 11 months ago
• denalitherapeutics / archs4
  An R interface to query and extract data from the ARCHS4 data
  ☆10Updated 6 years ago
• tjburns08 / knn_sleepwalk
  A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.
  ☆19Updated 6 months ago
• DavisLaboratory / scDECAF
  Reference-free celltype and phenotype annotation in single cell RNAseq by learning geneset representations
  ☆12Updated 4 months ago
• korsunskylab / rcna
  R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
  ☆13Updated last year
• pwwang / plotthis
  plotthis is an R package that is built upon ggplot2 and other plotting packages.
  ☆26Updated this week
• juanbot / CoExpNets
  Co-expression network management based on WGCNA + k-means
  ☆17Updated 3 years ago