theislab / moscot-framework_reproducibilityLinks
Data analysis for the moscot-framework project
☆12Updated 6 months ago
Alternatives and similar repositories for moscot-framework_reproducibility
Users that are interested in moscot-framework_reproducibility are comparing it to the libraries listed below
Sorting:
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 4 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆19Updated last year
- ☆23Updated 2 years ago
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- ☆10Updated 2 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 8 months ago
- ☆32Updated 5 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆19Updated last year
- Python implementation of Gene Trajectory☆25Updated 9 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Paired Insertion Counting for snATAC-seq data☆17Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- ☆9Updated 11 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- ☆22Updated 2 years ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆12Updated 10 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 9 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆23Updated last month
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- ☆13Updated 7 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year