Data analysis for the moscot-framework project
☆20Updated this week
Alternatives and similar repositories for moscot-framework_reproducibility
Users that are interested in moscot-framework_reproducibility are comparing it to the libraries listed below
Sorting:
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Deposited codes for snMultiome in human cortex manuscript☆14Aug 12, 2024Updated last year
- ☆13Feb 12, 2026Updated 2 weeks ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- Code and data sharing of Liu et al. 2023 manuscript☆16Apr 18, 2023Updated 2 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- Developmental Spatiotemporal Optimal Transport☆13Mar 19, 2025Updated 11 months ago
- ☆33Jan 23, 2025Updated last year
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆21Jun 14, 2024Updated last year
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated last month
- Data-driven signal detection for unbiased scRNA-seq data analysis☆22Jan 22, 2026Updated last month
- ☆14Aug 9, 2017Updated 8 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Dec 14, 2021Updated 4 years ago
- The scripts used for analyzing JAX mouse dataset☆26Oct 24, 2024Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆115Sep 29, 2025Updated 5 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated last year
- Tools for doing x way meta-analysis☆12Apr 12, 2022Updated 3 years ago
- Complex Disease Epigenomics Group's quality control and analysis pipelines for DNA methylation arrays, SNP arrays, BS-Seq, ATAC-Seq and C…☆11Updated this week
- ☆36Feb 20, 2026Updated last week
- Reproducibility repository for the Human Neural Organoid Atlas publication☆43Dec 16, 2024Updated last year
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated 9 months ago
- Cellsnake tool main repo☆36Feb 22, 2024Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆85Mar 20, 2025Updated 11 months ago
- ☆10Dec 4, 2023Updated 2 years ago
- ☆40Aug 29, 2025Updated 6 months ago
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆41Jul 10, 2024Updated last year
- Detection of pathological colorectal cancer based on deep learning☆12Jan 29, 2021Updated 5 years ago
- Metagenome sequencing pipeline 宏基因组分析流程☆11Aug 29, 2022Updated 3 years ago
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 2 years ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆11Feb 11, 2021Updated 5 years ago
- scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data☆10Jul 25, 2022Updated 3 years ago
- ☆16Jan 30, 2026Updated last month
- ☆14Oct 14, 2022Updated 3 years ago