brc7 / DiversitySamplingLinks
☆10Updated 3 years ago
Alternatives and similar repositories for DiversitySampling
Users that are interested in DiversitySampling are comparing it to the libraries listed below
Sorting:
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- De Bruijn graph representation in low memory☆36Updated last year
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- ☆14Updated 5 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- ☆12Updated 5 years ago
- ☆28Updated 3 months ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 4 months ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- ☆25Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 5 months ago
- ☆25Updated 4 years ago
- Pan-genome Seed Index☆20Updated 4 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆51Updated this week
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Fast and cache-efficient full-text pangenome index☆29Updated this week
- Validation of sycnmers compared to minimizers☆12Updated 2 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- GBWT in Rust☆43Updated 3 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- GBWT-based handle graph☆31Updated 2 weeks ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago