☆10Jun 16, 2022Updated 3 years ago
Alternatives and similar repositories for DiversitySampling
Users that are interested in DiversitySampling are comparing it to the libraries listed below
Sorting:
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 9 months ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 2 months ago
- Sketch-based surveillance platform☆13Dec 17, 2024Updated last year
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 5 years ago
- ☆44Nov 20, 2021Updated 4 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- Error-controlled interaction discovery in machine learning models☆22Jun 24, 2025Updated 8 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- ☆10May 15, 2018Updated 7 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- C++ library for CUDA accelerated computation of Non-negative Matrix Factorizations (NMF)☆12Mar 22, 2017Updated 8 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Source code for SimBac, a bacterial genome simulator☆14Sep 20, 2024Updated last year
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Just another minhash implementation.☆12Updated this week
- BagMinHash - Minwise Hashing Algorithm for Weighted Sets☆26Aug 26, 2020Updated 5 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Get microbial sequence data easier and faster☆28Nov 7, 2019Updated 6 years ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Oct 15, 2021Updated 4 years ago
- Implementation for sGLMM (Sparse graph-structured linear mixed model)☆15Feb 13, 2023Updated 3 years ago
- An exploratory implementation of bit overloads of the C++ standard algorithms☆18Mar 22, 2021Updated 4 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- RACE sketches for kernel density estimation (KDE)☆14Jan 27, 2020Updated 6 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Dec 9, 2024Updated last year
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- alignment and assembly free☆14May 29, 2023Updated 2 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 4 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆118Jan 29, 2026Updated last month
- ☆17Jan 5, 2021Updated 5 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Jul 19, 2024Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- Samwell: a python package for using genomic files... well☆20Jun 28, 2022Updated 3 years ago
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated last year
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 3 years ago