oertl / bagminhashLinks
BagMinHash - Minwise Hashing Algorithm for Weighted Sets
☆26Updated 4 years ago
Alternatives and similar repositories for bagminhash
Users that are interested in bagminhash are comparing it to the libraries listed below
Sorting:
- DartMinHash: Fast Sketching for Weighted Sets☆13Updated 4 years ago
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆42Updated 4 years ago
- ☆20Updated 4 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12Updated 12 years ago
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆22Updated 7 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆49Updated 3 years ago
- TreeMinHash: Fast Sketching for Weighted Jaccard Similarity Estimation☆14Updated 2 years ago
- ☆10Updated 4 years ago
- Performs memory-efficient reservoir sampling on very large input files delimited by newlines☆69Updated 5 years ago
- dynamic-updateable-index☆11Updated 9 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆81Updated last year
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Updated 3 years ago
- ☆13Updated last year
- External memory suffix array construction using inducing☆11Updated 4 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Updated 5 years ago
- Relative data structures based on the BWT☆12Updated 7 years ago
- ☆10Updated 3 years ago
- Parameterless and Universal FInding of Nearest Neighbors☆60Updated 4 months ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆88Updated last week
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆56Updated 5 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Updated 3 years ago
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings☆155Updated 11 months ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆66Updated 2 years ago
- Affinity Propagation for Sparse Similarities☆20Updated 14 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Updated 5 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago