Maihj / AC-DIAMONDView external linksLinks
AC-DIAMOND is a DNA-protein alignment tool
☆16Oct 11, 2023Updated 2 years ago
Alternatives and similar repositories for AC-DIAMOND
Users that are interested in AC-DIAMOND are comparing it to the libraries listed below
Sorting:
- ☆10Feb 28, 2018Updated 7 years ago
- Banded Striped DNA Sequence Alignment☆52May 9, 2023Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- ☆12Sep 7, 2019Updated 6 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 5 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Nov 6, 2025Updated 3 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆15Nov 19, 2025Updated 2 months ago
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Apr 24, 2024Updated last year
- ☆15Mar 9, 2018Updated 7 years ago
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆37May 25, 2023Updated 2 years ago
- ☆67Apr 9, 2024Updated last year
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆222Oct 23, 2025Updated 3 months ago
- ☆18Nov 21, 2024Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆19Jul 30, 2025Updated 6 months ago
- K-mer substring space decomposition☆44Sep 1, 2025Updated 5 months ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- Bidirectional WFA (Paper)☆48May 20, 2024Updated last year
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- exploratory and interactive microbiome analyses based on heatmaps☆27Jan 27, 2025Updated last year
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆18Jun 3, 2019Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Streaming assembly for MinION data☆25Dec 16, 2023Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Nov 1, 2021Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 5 months ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Sep 4, 2025Updated 5 months ago
- ☆58Dec 12, 2023Updated 2 years ago