ruanjue / bsalignLinks
Banded Striped DNA Sequence Alignment
☆45Updated 2 years ago
Alternatives and similar repositories for bsalign
Users that are interested in bsalign are comparing it to the libraries listed below
Sorting:
- Mumemto: multi-MUM and MEM finding across pangenomes☆101Updated last week
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Call select base modifications in PacBio HiFi reads☆8Updated 5 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- ☆116Updated this week
- ☆76Updated 5 years ago
- ☆67Updated last year
- A list of software for pangenomics☆118Updated last week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆54Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆67Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- ☆63Updated last week
- A local-haplotagging-based small and structural variant caller☆78Updated 2 months ago
- PGR-TK: Pangenome Research Tool Kit☆100Updated last year
- TGS scaffolding☆46Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- ☆36Updated last week
- A program for assessing the T2T genome continuity☆81Updated 2 weeks ago
- vcfdist: Accurately benchmarking phased variant calls☆82Updated last week
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 6 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆54Updated 3 weeks ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆35Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆36Updated 10 months ago
- ☆30Updated 2 months ago
- Statistics and analysis for variation graphs☆41Updated 6 months ago