ruanjue / bsalignLinks
Banded Striped DNA Sequence Alignment
☆45Updated 2 years ago
Alternatives and similar repositories for bsalign
Users that are interested in bsalign are comparing it to the libraries listed below
Sorting:
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆97Updated this week
- TGS scaffolding☆46Updated 3 years ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- ☆62Updated last week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated last week
- ☆76Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 weeks ago
- ☆44Updated 8 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- ☆116Updated last week
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Simple pileup-based variant caller☆90Updated 2 months ago
- A program for assessing the T2T genome continuity☆79Updated last week
- A battery of methylation tools for PacBio HiFi reads☆36Updated 2 weeks ago
- A local-haplotagging-based small and structural variant caller☆78Updated last month
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- ☆35Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆54Updated last week
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆55Updated 5 months ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆41Updated last year
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆36Updated 10 months ago
- Pan-Genomic Matching Statistics☆52Updated last year