ruanjue / bsalignLinks
Banded Striped DNA Sequence Alignment
☆47Updated 2 years ago
Alternatives and similar repositories for bsalign
Users that are interested in bsalign are comparing it to the libraries listed below
Sorting:
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆114Updated last week
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- ☆66Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- Call select base modifications in PacBio HiFi reads☆14Updated 8 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆37Updated 2 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆68Updated 2 years ago
- ☆66Updated last month
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆58Updated last month
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated this week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- TGS scaffolding☆47Updated 3 years ago
- ☆79Updated 5 years ago
- Statistics and analysis for variation graphs☆45Updated 10 months ago
- A program for assessing the T2T genome continuity☆88Updated 2 weeks ago
- ☆31Updated 5 months ago
- test repository☆29Updated 2 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- ☆117Updated 2 weeks ago
- A local-haplotagging-based small and structural variant caller☆86Updated last week
- ☆36Updated 3 months ago
- A tool for evaluating long-read de novo assembly results☆48Updated last year
- Identification of transposable element families from pangenome polymorphisms☆53Updated 4 months ago
- ☆101Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆63Updated last week