MadsAlbertsen / mmgenomeLinks
Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes
☆27Updated 8 years ago
Alternatives and similar repositories for mmgenome
Users that are interested in mmgenome are comparing it to the libraries listed below
Sorting:
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- ☆20Updated 8 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆43Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Discover and annotate the virome☆46Updated last month
- ☆36Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Updated 6 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Gene-flank analysis tool☆29Updated 8 months ago
- Metagenomic binning suite☆29Updated 2 years ago
- ☆26Updated 7 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- BEAV: Bacterial Element Annotation reVamped☆67Updated last week
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 3 years ago
- ☆14Updated 7 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆65Updated 2 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Bacterial GWAS analysis☆43Updated last month
- ☆18Updated 3 years ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year