yhg926 / public_kssdLinks
K-mer substring space decomposition
☆44Updated last month
Alternatives and similar repositories for public_kssd
Users that are interested in public_kssd are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A more efficient quality control tool for sequencing data☆31Updated 5 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- ☆30Updated 2 years ago
- Differential k-mer analysis☆37Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆67Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 2 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 7 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated last month
- ☆44Updated 3 years ago
- Banded Striped DNA Sequence Alignment☆47Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆45Updated last week
- Find Unique genomic Regions☆30Updated last month
- ☆28Updated 6 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆70Updated 6 years ago
- ☆32Updated 2 years ago