metagenlab / MeSSLinks
Snakemake pipeline for simulating shotgun metagenomic samples
☆28Updated 4 months ago
Alternatives and similar repositories for MeSS
Users that are interested in MeSS are comparing it to the libraries listed below
Sorting:
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- ☆81Updated last month
- Protein Alignment and Detection Interface☆60Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- Gene-flank analysis tool☆34Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 3 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- ☆32Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated last month
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- Microbiome classification pipeline☆65Updated 7 months ago
- ☆41Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 9 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆41Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- tree visualization for tree + annotation data☆45Updated 6 months ago