Alternatives and similar repositories for bifrost

Users that are interested in bifrost are comparing it to the libraries listed below

• GFA-spec / GFA-spec
  Graphical Fragment Assembly (GFA) Format Specification
  ☆217Updated last year
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆170Updated 2 months ago
• lh3 / kmer-cnt
  Code examples of fast and simple k-mer counters for tutorial purposes
  ☆170Updated 5 years ago
• thegenemyers / FASTK
  A fast K-mer counter for high-fidelity shotgun datasets
  ☆134Updated 2 months ago
• marbl / MashMap
  A fast approximate aligner for long DNA sequences
  ☆284Updated last year
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆199Updated 3 years ago
• maickrau / GraphAligner
  ☆277Updated 3 months ago
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆230Updated 5 months ago
• VGP / vgp-assembly
  VGP repository for the genome assembly working group
  ☆193Updated 6 months ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆214Updated this week
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆239Updated last year
• chanzuckerberg / shasta
  [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
  ☆274Updated 3 years ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆305Updated last year
• lbcb-sci / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆230Updated last year
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆208Updated 2 months ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆224Updated 9 months ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆184Updated last week
• isovic / graphmap
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆181Updated 6 years ago
• pangenome / odgi
  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
  ☆226Updated last week
• lh3 / readfq
  Fast multi-line FASTA/Q reader in several programming languages
  ☆176Updated 4 years ago
• yangao07 / abPOA
  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
  ☆133Updated 3 weeks ago
• rrwick / Badread
  a long read simulator that can imitate many types of read problems
  ☆249Updated last year
• lbcb-sci / raven
  De novo genome assembler for long uncorrected reads
  ☆228Updated 2 years ago
• ekimb / rust-mdbg
  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
  ☆183Updated last year
• dnbaker / dashing
  Fast and accurate genomic distances using HyperLogLog
  ☆162Updated 2 years ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆150Updated 3 weeks ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆209Updated 2 years ago
• pjedge / longshot
  diploid SNV caller for error-prone reads
  ☆204Updated last year
• mbhall88 / rasusa
  Randomly subsample sequencing reads or alignments
  ☆244Updated last week
• fbreitwieser / krakenuniq
  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
  ☆240Updated last year