pmelsted / bifrostLinks
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
☆222Updated 3 months ago
Alternatives and similar repositories for bifrost
Users that are interested in bifrost are comparing it to the libraries listed below
Sorting:
- Code examples of fast and simple k-mer counters for tutorial purposes☆171Updated 5 years ago
- SIMD partial order alignment tool/library☆171Updated 4 months ago
- A fast approximate aligner for long DNA sequences☆286Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆140Updated 3 weeks ago
- Graphical Fragment Assembly (GFA) Format Specification☆218Updated last year
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- Long read / genome alignment software☆311Updated last month
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆170Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆243Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Updated last month
- Fast multi-line FASTA/Q reader in several programming languages☆176Updated 4 years ago
- VGP repository for the genome assembly working group☆193Updated 8 months ago
- ☆284Updated last month
- Program for aligning DNA sequences, a pairwise aligner.☆239Updated 7 months ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Updated last year
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 3 years ago
- De novo genome assembler for long uncorrected reads☆229Updated 2 years ago
- Pairwise whole genome aligner☆227Updated 3 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Updated last week
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Updated 6 years ago
- software tools for haplotype assembly from sequence data☆226Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆135Updated 3 months ago
- Find all significant local alignments between reads☆141Updated last year
- Aligns short reads using dynamic seed size with strobemers☆192Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆235Updated 2 years ago
- Graph realignment tools for structural variants☆165Updated 3 years ago
- Filtering and trimming of long read sequencing data☆214Updated 3 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆234Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆157Updated last week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago