pmelsted / bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
☆208Updated 11 months ago
Alternatives and similar repositories for bifrost:
Users that are interested in bifrost are comparing it to the libraries listed below
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Updated 2 years ago
- SIMD partial order alignment tool/library☆166Updated last year
- Long read / genome alignment software☆279Updated 4 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Updated 5 years ago
- Code examples of fast and simple k-mer counters for tutorial purposes☆167Updated 5 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆207Updated 7 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆216Updated 3 weeks ago
- A fast approximate aligner for long DNA sequences☆280Updated 5 months ago
- VGP repository for the genome assembly working group☆190Updated last year
- ☆268Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆215Updated last year
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 3 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆222Updated 7 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆124Updated last month
- Aligns short reads using dynamic seed size with strobemers☆165Updated last week
- a long read simulator that can imitate many types of read problems☆208Updated 8 months ago
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- k-mer based assembly evaluation☆303Updated 8 months ago
- quality filtering tool for long reads☆323Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆119Updated 2 weeks ago
- Pairwise whole genome aligner☆151Updated this week
- De-Novo Repeat Discovery Tool☆207Updated 2 months ago
- software tools for haplotype assembly from sequence data☆217Updated last month
- Ultra-fast de novo assembler using long noisy reads☆134Updated 4 years ago
- compacted de Bruijn graph construction in low memory☆99Updated 5 months ago
- haplotypic duplication identification tool☆228Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆257Updated 2 months ago
- De novo genome assembler for long uncorrected reads☆214Updated last year
- Assembled Genomes Compressor☆160Updated 4 months ago
- Nanopore data assembler☆146Updated 2 years ago