pmelsted / bifrostLinks
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
☆219Updated 2 weeks ago
Alternatives and similar repositories for bifrost
Users that are interested in bifrost are comparing it to the libraries listed below
Sorting:
- SIMD partial order alignment tool/library☆170Updated 3 weeks ago
- Graphical Fragment Assembly (GFA) Format Specification☆215Updated last year
- A fast approximate aligner for long DNA sequences☆283Updated last year
- Code examples of fast and simple k-mer counters for tutorial purposes☆170Updated 5 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆131Updated 3 weeks ago
- Program for aligning DNA sequences, a pairwise aligner.☆227Updated 3 months ago
- ☆275Updated 2 months ago
- VGP repository for the genome assembly working group☆193Updated 4 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆129Updated this week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆237Updated last year
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Updated 2 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆182Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆226Updated last year
- De novo genome assembler for long uncorrected reads☆226Updated last year
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆222Updated 2 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆203Updated 2 weeks ago
- Find all significant local alignments between reads☆140Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆239Updated last year
- Long read / genome alignment software☆300Updated 11 months ago
- Pairwise whole genome aligner☆191Updated this week
- a long read simulator that can imitate many types of read problems☆243Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆150Updated last week
- compacted de Bruijn graph construction in low memory☆99Updated last year
- Aligns short reads using dynamic seed size with strobemers☆178Updated last week
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Create a tree using Mash distances☆172Updated last year
- ☆263Updated 3 months ago
- software tools for haplotype assembly from sequence data☆222Updated 8 months ago
- Fast multi-line FASTA/Q reader in several programming languages☆176Updated 4 years ago