Alternatives and similar repositories for calour:

Users that are interested in calour are comparing it to the libraries listed below

• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆34Updated last month
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 4 years ago
• biocore / micronota
  annotation pipeline for microbial genomes and metagenomes
  ☆18Updated 7 years ago
• snayfach / IGGdb
  Database of genomes integrated from the gut microbiome and other environments
  ☆45Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 2 years ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• MetaSUB / CAP2
  ☆13Updated last year
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆68Updated last year
• leylabmpi / DeepMAsED
  Deep learning for Metagenome Assembly Error Detection
  ☆26Updated 4 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆34Updated 2 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆68Updated 4 months ago
• mblstamps / stamps2022
  Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
  ☆21Updated 2 years ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆67Updated 4 years ago
• katholt / plotTree
  ☆67Updated 8 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago
• knightlab-analyses / multiomic-cooccurrences
  ☆25Updated 4 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• biocore / unifrac
  ☆41Updated 3 weeks ago
• metageni / SUPER-FOCUS
  A tool for agile functional analysis of shotgun metagenomic data
  ☆24Updated 7 months ago
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• biobakery / MetaPhlAn2
  ☆31Updated 4 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• transXpress / transXpress
  transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
  ☆27Updated last year
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆34Updated 2 years ago
• biocore / gneiss
  compositional data analysis toolbox
  ☆59Updated 2 years ago
• eggnogdb / emapper-benchmark
  Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.
  ☆22Updated 8 years ago
• knights-lab / MLRepo
  ☆37Updated 3 years ago