biocore / calour
exploratory and interactive microbiome analyses based on heatmaps
☆27Updated 3 weeks ago
Alternatives and similar repositories for calour:
Users that are interested in calour are comparing it to the libraries listed below
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆33Updated 2 years ago
- MicrobeDirectory 2.0☆22Updated 4 years ago
- Sample search by metadata and features☆45Updated last year
- annotation pipeline for microbial genomes and metagenomes☆18Updated 6 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆42Updated 2 months ago
- Protein Alignment and Detection Interface☆61Updated 9 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Database of genomes integrated from the gut microbiome and other environments☆44Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 2 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated last month
- PaperBLAST: find papers about a protein or its homologs☆38Updated last month
- SHallow shOtGUN profiler☆54Updated 2 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆25Updated 10 months ago
- shotgun pipeline☆11Updated 5 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆37Updated 3 weeks ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Updated 4 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- compositional data analysis toolbox☆57Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated this week
- A very simple BLAST filtering pipeline☆18Updated 10 years ago
- A package to annotate protein sequences☆54Updated 6 months ago
- ☆23Updated 5 years ago
- Automated taxonomy decoration onto a tree☆15Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆14Updated 2 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆50Updated 2 years ago