exploratory and interactive microbiome analyses based on heatmaps
☆27Jan 27, 2025Updated last year
Alternatives and similar repositories for calour
Users that are interested in calour are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago
- shotgun pipeline☆12Apr 3, 2019Updated 6 years ago
- Bioactive Molecular Networks Project☆15Nov 17, 2020Updated 5 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Apr 4, 2025Updated 11 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Sample search by metadata and features☆47Aug 31, 2023Updated 2 years ago
- AC-DIAMOND is a DNA-protein alignment tool☆16Oct 11, 2023Updated 2 years ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆83May 14, 2019Updated 6 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆21Jul 22, 2023Updated 2 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 7 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Trinotate annotation report summaries in R☆13Feb 24, 2016Updated 10 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Feb 17, 2026Updated last month
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jan 20, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- Deblur is a greedy deconvolution algorithm based on known read error profiles.☆97Mar 8, 2025Updated last year
- An extension of the ProteoWizard framework enabling the support of the mzDB format☆14Feb 12, 2021Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Mar 9, 2026Updated 2 weeks ago
- Metabolite Atlas Main Repository☆16Feb 27, 2026Updated 3 weeks ago
- A Little Book of R for Bioinformatics☆53Mar 2, 2013Updated 13 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated 10 months ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 2 years ago
- A set of metabolomics tools for use in Galaxy☆11Sep 2, 2022Updated 3 years ago
- A phylogenetic profile analysis tool☆38Mar 11, 2026Updated 2 weeks ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 4 years ago
- for YouTube Channel☆16Jun 11, 2017Updated 8 years ago
- ☆11Feb 20, 2026Updated last month
- R Studio Addins for common data frame operations☆13Aug 5, 2016Updated 9 years ago
- infinitylists allows you to generate place-based species lists for anywhere in the world, pulling collection data and iNaturalist records…☆13Apr 1, 2025Updated 11 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Jan 30, 2017Updated 9 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- Van Gogh-inspired colour palettes for R with accessibility, metadata, exports, and ggplot2 integration☆10Dec 11, 2025Updated 3 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆19Jul 24, 2023Updated 2 years ago
- YAMP: Yet Another Metagenomic Pipeline☆62Jun 5, 2023Updated 2 years ago