Alternatives and similar repositories for calour

Users that are interested in calour are comparing it to the libraries listed below

• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated 2 months ago
• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆34Updated 9 months ago
• snayfach / IGGdb
  Database of genomes integrated from the gut microbiome and other environments
  ☆45Updated 2 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆37Updated 3 years ago
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 5 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• biocore / gneiss
  compositional data analysis toolbox
  ☆60Updated 3 years ago
• biocore / micronota
  annotation pipeline for microbial genomes and metagenomes
  ☆18Updated 7 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆25Updated last year
• leylabmpi / DeepMAsED
  Deep learning for Metagenome Assembly Error Detection
  ☆25Updated 5 years ago
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated 2 years ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆50Updated 3 weeks ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆67Updated last month
• biocore / oecophylla
  shotgun pipeline
  ☆12Updated 6 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆30Updated 11 months ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated 2 years ago
• sanger-pathogens / pathogen-informatics-training
  ☆75Updated 5 years ago
• MG-RAST / MG-RAST
  The MG-RAST Backend -- the API server
  ☆46Updated 2 years ago
• katholt / plotTree
  ☆67Updated 9 years ago
• zhouhj1994 / LinDA
  ☆38Updated 2 years ago
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• danielriosgarza / MAMBO
  ☆10Updated 6 years ago
• mdozmorov / Microbiome_notes
  A continually expanding collection of microbiome analysis tools
  ☆18Updated 3 years ago
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• Golob-Minot / geneshot
  ☆29Updated last year
• pirovc / metameta
  ☆23Updated 6 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆71Updated last year