Alternatives and similar repositories for calour

Users that are interested in calour are comparing it to the libraries listed below

• snayfach / IGGdb
  Database of genomes integrated from the gut microbiome and other environments
  ☆44Updated 2 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated 3 months ago
• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆34Updated 5 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• biocore / gneiss
  compositional data analysis toolbox
  ☆60Updated 2 years ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆46Updated this week
• biocore / micronota
  annotation pipeline for microbial genomes and metagenomes
  ☆18Updated 7 years ago
• husonlab / megan-ce
  MEGAN Community Edition
  ☆72Updated last year
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆36Updated 3 years ago
• pirovc / metameta
  ☆23Updated 5 years ago
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆24Updated last month
• leylabmpi / DeepMAsED
  Deep learning for Metagenome Assembly Error Detection
  ☆25Updated 4 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 9 months ago
• MG-RAST / MG-RAST
  The MG-RAST Backend -- the API server
  ☆45Updated 2 years ago
• biocore / redbiom
  Sample search by metadata and features
  ☆47Updated 2 years ago
• borenstein-lab / fishtaco
  FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…
  ☆24Updated 4 years ago
• Golob-Minot / geneshot
  ☆29Updated last year
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 8 months ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆22Updated 5 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆24Updated 10 months ago
• caporaso-lab / mockrobiota
  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  ☆82Updated 6 years ago
• biocore / tax2tree
  Automated taxonomy decoration onto a tree
  ☆15Updated 2 years ago
• biocore / oecophylla
  shotgun pipeline
  ☆12Updated 6 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆41Updated 4 years ago
• biocore / songbird
  Vanilla regression methods for microbiome differential abundance analysis
  ☆59Updated 4 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆64Updated last year