A comprehensive pipeline to analyze and visualize structural variants
☆20Jan 28, 2020Updated 6 years ago
Alternatives and similar repositories for BreakPointSurveyor
Users that are interested in BreakPointSurveyor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated last week
- Biopet docs☆17Aug 2, 2018Updated 7 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 7 years ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 9 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Software for creating and comparing genome fingerprints.☆11Jun 30, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- Analysis of Cancer Genomes; 2017 edition☆16Jan 21, 2018Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- ☆14Oct 26, 2017Updated 8 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 8 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Mar 28, 2026Updated last month
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- Training and using TFFM/PSSM/4-bits + DNA shape classifiers☆13Jun 11, 2018Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆36Jul 28, 2019Updated 6 years ago
- ☆44Oct 27, 2018Updated 7 years ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- AC-DIAMOND is a DNA-protein alignment tool☆17Oct 11, 2023Updated 2 years ago
- This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository…☆51Jun 1, 2018Updated 7 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago