PROBIC / mSWEEPLinks
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
☆14Updated 9 months ago
Alternatives and similar repositories for mSWEEP
Users that are interested in mSWEEP are comparing it to the libraries listed below
Sorting:
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- ☆16Updated 5 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Differential k-mer analysis☆36Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆31Updated 9 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last month
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆32Updated 2 years ago
- ☆26Updated 3 years ago
- ☆28Updated 10 months ago
- ☆31Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- Variant call verification☆16Updated 2 months ago
- ☆20Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 9 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 8 months ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago