PROBIC / mSWEEPLinks
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
☆14Updated 11 months ago
Alternatives and similar repositories for mSWEEP
Users that are interested in mSWEEP are comparing it to the libraries listed below
Sorting:
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 11 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 5 months ago
- ☆45Updated 2 months ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 6 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- Differential k-mer analysis☆37Updated last year
- ☆32Updated 2 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year
- Library of sketching functions used by PopPUNK☆30Updated 6 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆54Updated last week
- Remove human reads from a sequencing run☆40Updated 2 months ago
- ☆15Updated 5 years ago
- ☆28Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last week